Gene BURPS1106A_1799 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBURPS1106A_1799 
Symbol 
ID4900429 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia pseudomallei 1106a 
KingdomBacteria 
Replicon accessionNC_009076 
Strand- 
Start bp1761220 
End bp1761870 
Gene Length651 bp 
Protein Length216 aa 
Translation table11 
GC content71% 
IMG OID640135029 
Productputative RNA chaperone Hfq 
Protein accessionYP_001066068 
Protein GI126453854 
COG category[R] General function prediction only 
COG ID[COG1923] Uncharacterized host factor I protein 
TIGRFAM ID[TIGR02383] RNA chaperone Hfq 


Plasmid Coverage information

Num covering plasmid clones2 
Plasmid unclonability p-value0.00326257 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAATC CTGCAGAATC CCATCCGCAA AACGACTTCA TCAATGCCGC GCGCAAGGAA 
CGCAAGCGCG TCGAAATTTA TCTCGTCAAC GGTATTCGAC TGACGGGTTG CATCGAGTCG 
TTCGACCAGT ATCTGGTGAT GCTGCGCACG CCCGTCGGCC TGCAAGGCAT CTATAAACGC 
GCCATCTCGA CGATCCAGCT CGACACGGGC GGCTCCCGTC CGGGCGGACG CGGCCCGCGC 
GCGGGCGGCG CCCACGGCGG CGGCGGACGC CCCGGCGGAC GCGAAGGCGG CGGTCATGGC 
CCGTACGGCT CGCACGGCGG CTCGCGCGAA CCCCGCGGCG ACGGCGGCGG CTATGGCGCT 
CGCGAACCGC GTGGCGACGG CGGTTATGGC TCCCGCGAAT CGCGCGGCGA CGGCGGCTAC 
GGCTCCCGCG AACCGCGTGG CGACGGCGGC TACGGTTCCC GCGAACCGCG TGGCGACGGC 
GGCTATGGCG CGCGCGAGCC GCGTGAACCG CGCGAGCCCC GCGAGTCTTA CGGCGCGCCG 
CAAGAAGGCG CATCGACGCC GTCCGGCACG CAGGAACGCA ACGGCAACGG CAACGGCCCG 
GTGATCGTCA CGCGCCGTCG CCGTTCGCTC GGCCCGACCG ACGGCCAATA A
 
Protein sequence
MANPAESHPQ NDFINAARKE RKRVEIYLVN GIRLTGCIES FDQYLVMLRT PVGLQGIYKR 
AISTIQLDTG GSRPGGRGPR AGGAHGGGGR PGGREGGGHG PYGSHGGSRE PRGDGGGYGA 
REPRGDGGYG SRESRGDGGY GSREPRGDGG YGSREPRGDG GYGAREPREP REPRESYGAP 
QEGASTPSGT QERNGNGNGP VIVTRRRRSL GPTDGQ