Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_1363 |
Symbol | |
ID | 4903105 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009076 |
Strand | - |
Start bp | 1332348 |
End bp | 1334183 |
Gene Length | 1836 bp |
Protein Length | 611 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 640134593 |
Product | sensory box diguanylate cyclase/cyclic diguanylate phosphodiesterase |
Protein accession | YP_001065636 |
Protein GI | 126454781 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.382397 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGAAGCCA TCAGGAACAA AACGCCCCGC AAGGGCTCCT GGCGCGCCGC ACTTCACCAG CTCCGCCGCT TCGCCTGGTC GGGCGGCGCG CTGATGCCCG CGCGCGCCGG TACGCCGCGC GCCGACGACA CAGTTCGAAG CTGGCTGGAG CAAACCGTCG GCGCGGTCGA TTTCCTCGCC CACGTGGACC GGGACCTGCG CTTCCTGTAC GTGTCCGATG CCAGCCTGCG CTTCATCGGT TATCACCGCG ACTATCTGCA CACGCTGACG CTGCGCGAGC TGATCCCCGA GCAGGATACC GCGACGCTCG ACGGCCTGCT CGCGCGCGCG TCGCAGACGG GCGATGTCGA GAAGGCGACG CTCTGCCTCG TGAAATCGCT GACCTATCCG CTCGACGTCG AGGTGCGCGC GGTGCGCAGC CGCCACCACG GCATCGACGG CTTCGCGATC GCCGCGTTCG ACGTGTCGTC GTGGCGCGCG ATCGAGGCCC GGCTCACCTA CGAGCTGCAC CACGATCCGA TGACGGGGCT CGATAACCTG TCGGCGCTCC TGCCCGCGCT GATGCGCGCG CAGCAGATCG CCGACGAAGG CGGCGGCTGC ACGGCGCTGC TGCTGCTCGA TCTCGACGAT TACCAGCGGA TCAACCGCGC GCTCGGCTAC GACGCGGGCG ACGCGCTGCT GCGCGACACC GCGCAGCGGC TGCAACGGCT CGCGACCCGC GGCGAGCGGC TCGCGCGGGT CGCGAGCGAC AAGTTCGCGG TGATGCTGAG CGCGCCCACG CGCGTCGCCG CGCTCGACGC GGCCGAAGCG CTCGCGCGCC AGCTGCAGAC GGCCGTCCAG CGGCCGTACG CGTATGACGG GCAGGCCGTG CACCTGTCGG CGAGCGTCGG CATCGCGATC TATCCGGACG CGCGCGCGAC GTCGAAGCAC GCGCAGCACC ACAGCCCGCT GCTGCGGCGC GCGGACCGCG CGCTCGCGCA GGCGAAGGCG GCGGGCGGCA ACGCGCTCGC GTTCCACCAG CCGACCGACG ATCCGGCCGA CGCCGAGCGC CTGAAGCTCG AGGCCGATCT CTACAACGGC GTGCGCAACG GCGAGTTCTC GCTGCATTTC CAGCCGATCA CGAAGAGCCT GTCGGGCGCC GTGGTCGGCG TCGAGGCGCT GATCCGCTGG CACCATCCGG TGCACGGGCT CGTCGCGCCC GCGACGTTCA TCCCGCTCGC CGAATCGATC GGCCTCATCA ACTATCTCGG CAACTGGGTG CTGAAGGCCG CGTGCATGCA GCTCGTGTCG TGGGACCGGC AAGGCATCGC GCTGCAGTAC GTGGCCGTCA ACGTGTCGCC GCAGCAGTTC CGCGATCCGC GTTTCACGCA GAGCGTGCGC GACGCGATCA AGCTGACGGG CATCGATCCG CGCCGCATCG TTCTCGAGAT CACCGAAAGC CTGCTGATGC ACGATCCGAA TCATGCGAAG ACGCTGCTCG AGGAAGTGAC CGAGCTCGGC ATCCGGTTCG CGGTCGACGA TTTCGGCACC GGCTACTCGA GCCTCGCGTA CCTGCAGAGC TTCCCGCTCG CGAAGCTGAA GATCGACCGC AGTTTCGTCG AAAATCTGTT GACGTCCAGA AACGACCGCG CGATCGTGTC GGCGGTCGTC GGCCTCGCGC AGACGCTCGA GCTCGAGCTC GTCGCGGAGG GCGTCGAGAC CGAGGCGCAG CGCACGCTGC TCACCGAGAT GGGCTGCAAC CACATTCAAG GCTGGCTCGT CTGCCAGGCG CTGCCGTCCG ACGAACTCGC GCAACGCTTC GAGGCGCAGG AGCTCCATCT GCACGCCACC GCATGA
|
Protein sequence | MEAIRNKTPR KGSWRAALHQ LRRFAWSGGA LMPARAGTPR ADDTVRSWLE QTVGAVDFLA HVDRDLRFLY VSDASLRFIG YHRDYLHTLT LRELIPEQDT ATLDGLLARA SQTGDVEKAT LCLVKSLTYP LDVEVRAVRS RHHGIDGFAI AAFDVSSWRA IEARLTYELH HDPMTGLDNL SALLPALMRA QQIADEGGGC TALLLLDLDD YQRINRALGY DAGDALLRDT AQRLQRLATR GERLARVASD KFAVMLSAPT RVAALDAAEA LARQLQTAVQ RPYAYDGQAV HLSASVGIAI YPDARATSKH AQHHSPLLRR ADRALAQAKA AGGNALAFHQ PTDDPADAER LKLEADLYNG VRNGEFSLHF QPITKSLSGA VVGVEALIRW HHPVHGLVAP ATFIPLAESI GLINYLGNWV LKAACMQLVS WDRQGIALQY VAVNVSPQQF RDPRFTQSVR DAIKLTGIDP RRIVLEITES LLMHDPNHAK TLLEEVTELG IRFAVDDFGT GYSSLAYLQS FPLAKLKIDR SFVENLLTSR NDRAIVSAVV GLAQTLELEL VAEGVETEAQ RTLLTEMGCN HIQGWLVCQA LPSDELAQRF EAQELHLHAT A
|
| |