Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BURPS1106A_0597 |
Symbol | rpoN |
ID | 4902306 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia pseudomallei 1106a |
Kingdom | Bacteria |
Replicon accession | NC_009076 |
Strand | - |
Start bp | 565208 |
End bp | 566716 |
Gene Length | 1509 bp |
Protein Length | 502 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 640133827 |
Product | RNA polymerase factor sigma-54 |
Protein accession | YP_001064879 |
Protein GI | 126453404 |
COG category | [K] Transcription |
COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.779758 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAGCCA GTCTTCAACT TCGCCTGTCG CAGCATCTCG CGCTCACGCC CCAGCTTCAG CAGTCGATCC GGCTGCTGCA ACTGTCGACG CTCGAACTGC AACAGGAAGT CGCGACGGCG ATCGCGCAGA ACCCGCTGCT CGAGAACGAC GATGACTGGA TCGCGAGCCC GTTGCGCGTC GCGGCCGACG GCTCGGTGAT CGCGCAGACG CCCGCGTCGT CCGCGCCCGA GCCGATGGCG GGCGCGCCGA ACGGCACGGC TGCGACCAAT GAGCGCACCG AGCGCGACGA AACCGCCGGC GTCGACGAAT ACGACAGCTA TTCGGCCGAC GGCGGCGACG CGAGCCAGTG GAACCTCGAC GACTTCGGCC GCTCGCCCGC CGCGTCCGAC GACGACGATC TGCCGCCGAT GCAGATCCAC GAGACGTCGA CGTCGCTGCG CGATCATCTG ATGGCGCAGT TGCGCGTCAC GCAGGCGAGC CCGCGCGATC GCGCGCTCGT CACGTTCCTG ATCGAATCGC TCGACGACGA CGGCTACCTG AGCGCGTCGC TCGAGGAAGT GCTCGCCGAT CTGCCGGCGG AGCTCGAGGT CGACGTCGAC GAACTGAACG CGGCGCTCGC GCTCGTGCAC AGCTTCGATC CGGCGGGCGT CGGCGCGCGC TCCGCGTCCG AATGCCTGAA GCTGCAGTTG CTGCGCCTGG ATCCGTCCCC GACGCGCGCG CTCGCGCTCG ATATCGTGTC GCAGCATCTG GAGCTGCTCG CCGCGCGCGA TTTCACGCGC CTGCGCAAGC AACTGAAGGC GACCGACGAC GCGCTGCGCG ACGCGCACGC GCTGATCCGC TCGCTCGAGC CGTTCCCCGG CGCGGCGTAC GGCAAGGCCG AAGCCGATTA CGTGGTGCCC GACATCATCG TGAAGAAGGC CGGCCAGAAC TGGCAGGCGG AACTCAATCC GGAAGTGGTG CCGAAGCTGC GGATCAACAA TCTTTACGCG AACATCCTGC GCAACAGCCG GGGCGATCCG AGCGCGGGAT CGCTGAAGCA ACAGCTTCAG GAAGCGCGCT GGCTGATCAA GAACATTCAG CAGCGGTTCG AGACGATCCT GCGCGTCGCG CAGGCGATTG TCGAGCGTCA GAAGAATTTC TTCGCGCACG GCGAAATTGC GATGCGCCCC TTGGTTTTGC GGGAAATAGC TGATACGCTG GGCCTACACG AGTCGACTGT CTCCCGTGTG ACAACCGGCA AGTACATGCT GACCCCGTTC GGCACACTTG AATTTAAGTA CTTCTTCGGA TCGCACGTAT CGACAGACAC CGGAGGTGCC GCGTCGTCGA CAGCGATCCG CGCCCTCATC AAACAACTGA TAGGAGCCGA AGACCCCAAA TCCCCTCTTT CGGACAGTCG CATAGCCGAG CTGCTAGCGG AACAAGGGTT CGTGGTCGCG CGCCGCACGG TTGCCAAATA TCGCGAAGCC CTCAAGATCC CGGCGGTGAA TCTGCGCAAG TCTCTGTAG
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Protein sequence | MKASLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVATA IAQNPLLEND DDWIASPLRV AADGSVIAQT PASSAPEPMA GAPNGTAATN ERTERDETAG VDEYDSYSAD GGDASQWNLD DFGRSPAASD DDDLPPMQIH ETSTSLRDHL MAQLRVTQAS PRDRALVTFL IESLDDDGYL SASLEEVLAD LPAELEVDVD ELNAALALVH SFDPAGVGAR SASECLKLQL LRLDPSPTRA LALDIVSQHL ELLAARDFTR LRKQLKATDD ALRDAHALIR SLEPFPGAAY GKAEADYVVP DIIVKKAGQN WQAELNPEVV PKLRINNLYA NILRNSRGDP SAGSLKQQLQ EARWLIKNIQ QRFETILRVA QAIVERQKNF FAHGEIAMRP LVLREIADTL GLHESTVSRV TTGKYMLTPF GTLEFKYFFG SHVSTDTGGA ASSTAIRALI KQLIGAEDPK SPLSDSRIAE LLAEQGFVVA RRTVAKYREA LKIPAVNLRK SL
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