| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BURPS1106A_0258 |
|---|
| Symbol | dppC |
|---|
| ID | 4902506 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia pseudomallei 1106a |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009076 |
|---|
| Strand | + |
|---|
| Start bp | 241110 |
|---|
| End bp | 242051 |
|---|
| Gene Length | 942 bp |
|---|
| Protein Length | 313 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 640133488 |
|---|
| Product | dipeptide ABC transporter, permease protein DppC |
|---|
| Protein accession | YP_001064541 |
|---|
| Protein GI | 126452395 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGCGGCC ACGCGGGAGG CACGATGAGC AACATGCAAA ACGCCATGCC GTCGCAGGCG
GCGCCCGCAA GCGGGCGCGT GCTCGCGCTG CGCGAATTCT GGGCGAATTT CTCCCGCAAC
CGCGGCGCGG TCGGCGCCGG CATCGTCGTG CTCGCGCTGG TGGCCGTCGC GCTCCTCGCG
CCGGTGCTCG CGCCGCACAG CCCGATCGAG CAGTACCGCG ACTACGTGAA GATCCCGCCC
GCGTGGCTGG CGGGCGGCAA CTGGCAATTC GTGCTCGGCA CCGACGAAGC GGGCCGCGAC
ATCCTCTCGC GGCTGATGTA CGGCGCGCGG ATGTCGTTCT GGATCGGCTT CGTCTCGGTC
GTGCTCGCGC TGATTCCGGG CGTCGTGCTC GGGCTCGTCG CCGCGTTCTT CCAGAAATGG
GCCGACACGC CCGTGATGCG CGTGATGGAC GTGCTGCTCG CGCTGCCGTC GCTGCTGCTC
GCCGTCGCGG TCGTCGCGAT CATCGGCCCG GGCCTCACCA ACACGATGTT CGCGATCGCG
ATCGTCGCGC TGCCCGCTTA CGTGCGCCTC ACGCGCGCGT CGGCGCTCGG CGAGCTGCAG
AAGGAGTACG TGACGGCCTC GCGCGTCGCG GGCGCGGGCA CGCCGCGGCT GATGTTCTCG
CAGGTGCTGC CGAACTGCAC GGCGCCGCTC ATCGTGCAGG CGACGCTCGG CTTCTCGTCG
GCGATCCTCG ATGCGGCGGC GCTCGGCTTT CTCGGCCTCG GCGTGCAGCC GCCGACGGCC
GAGTGGGGCG CGATGCTCGC GTCCGCGCGC GACTACATCG ACAACGCATG GTGGATCGTC
ACGATGCCGG GCCTGTCGAT CCTGATCTCG GTGCTCGCGA TCAACCTGCT CGGCGACGGG
CTGCGCGACG CGCTCGATCC CAAACTCAAA CGGATGGCCT GA
|
|---|
| Protein sequence | MRGHAGGTMS NMQNAMPSQA APASGRVLAL REFWANFSRN RGAVGAGIVV LALVAVALLA
PVLAPHSPIE QYRDYVKIPP AWLAGGNWQF VLGTDEAGRD ILSRLMYGAR MSFWIGFVSV
VLALIPGVVL GLVAAFFQKW ADTPVMRVMD VLLALPSLLL AVAVVAIIGP GLTNTMFAIA
IVALPAYVRL TRASALGELQ KEYVTASRVA GAGTPRLMFS QVLPNCTAPL IVQATLGFSS
AILDAAALGF LGLGVQPPTA EWGAMLASAR DYIDNAWWIV TMPGLSILIS VLAINLLGDG
LRDALDPKLK RMA
|
|---|
| |