| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II2105 |
|---|
| Symbol | |
|---|
| ID | 3845713 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia thailandensis E264 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007650 |
|---|
| Strand | - |
|---|
| Start bp | 2585996 |
|---|
| End bp | 2589181 |
|---|
| Gene Length | 3186 bp |
|---|
| Protein Length | 1061 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637839406 |
|---|
| Product | hydrophobe/amphiphile efflux family protein |
|---|
| Protein accession | YP_440293 |
|---|
| Protein GI | 83718161 |
|---|
| COG category | [V] Defense mechanisms |
|---|
| COG ID | [COG0841] Cation/multidrug efflux pump |
|---|
| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.179451 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAACATAT CGAAATTCTT CATCGATCGA CCGATCTTCG CAGGGGTGCT GTCGGTCGTC
ATCCTGCTCG CCGGGATGAT CGCGATGTTC CTGCTGCCGA TTTCCGAATA CCCGGAAGTC
GTGCCGCCGT CCGTGATCGT CAAGGCGCAG TACCCGGGCG CGAACCCGAA GGTGATCGCC
GAGACGGTGG CGTCGCCGCT CGAGGAGCAG ATCAACGGCG TCGAGGACAT GCTGTACATG
CAGTCGCAGG CGAACAGCGA CGGCAACATG ACGATCACCG TCACGTTCAA GCTCGGCACC
GATCCGGACA AGGCGACGCA GCTCGTGCAG AACCGCGTGA ACCAGGCGCT GCCGCGCCTG
CCGGAAGACG TGCAGCGGCT CGGGATCACG ACGGTCAAGA GCTCGCCGAC GCTCACGATG
GTCGTGCACC TGATCTCGCC GAACGACAGC TACGACATGA CGTATCTGCG CAACTACGCG
CTCATCAACG TGAAGGATCG CCTGTCGCGC ATCCAGGGCG TCGGCCAGGT GCAGCTCTGG
GGCGCGGGCG ATTACGCGAT GCGCGTGTGG CTCGATCCGC AGAAGGTCGC GCAGCGCAAC
CTGACGGCCG ACGACGTCGT GCGCGCGATC CGCGAGCAGA ACGTGCAGGT CGCCGCCGGC
GTGATCGGCG CGTCGCCGAC GCTGCCGGGC ACGCCGCTGC AACTGTCGGT GAACGCGCGC
GGGCGCCTGC AGAACGAGGA CGAGTTCGGC GACATCGTCG TGAAGACGGC GCCGGACGGC
GGCGTCACGC GCCTGCGCGA CATCGCGCGA ATCGAGCTCG ACGCGTCCGA GTACGGGCTG
CGCTCGCTGC TCGACAACAA GCCGGCCGTC GCGATGGCGA TCAACCAGTC GCCGGGCGCG
AACTCGCTCG CGATTTCCGA CGAAGTGCGC AAGACGATGG CCGAGCTCAA GCAGGATTTC
CCGGCGGGCG TCGACTACAA GATCGTCTAT GACCCGACGC AGTTCGTGCG CTCGTCGATC
AAGGCGGTCG TCCACACGCT GCTCGAGGCG ATCGCGCTCG TCGTGATCGT CGTGATCGTG
TTCCTGCAGA CGTGGCGCGC CTCGATCATT CCGCTGATCG CGGTGCCGGT GTCGATCGTC
GGCACCTTCT CGCTGCTGCT GCTGTTCGGC TATTCGATCA ATGCGCTCTC GCTGTTCGGG
ATGGTGCTCG CGATCGGGAT CGTCGTCGAC GATGCGATCG TCGTCGTCGA GAACGTCGAG
CGCAACATCG AGAACGGGCT CACCGCGCGC GCCGCCACCT ACAAGGCGAT GCAGGAGGTG
AGCGGGCCGA TCATCGCGAT CGCGCTCACG CTCGTCGCCG TGTTCGTGCC GCTTGCGTTC
ATGTCCGGCT TGACGGGCCA GTTCTACAAG CAGTTCGCGA TGACGATCGC GATCTCGACG
GTGATCTCGG CGTTCAATTC GCTCACGCTG TCGCCCGCGC TGTCGGCGAT CCTGCTCAAG
GGCCACGGCG ACAAGGAAGA CTGGCTCACG CGCGTGATGA ACCGCGTGCT CGGCGGCTTC
TTCCGCGGCT TCAACAAGGT GTTCCATCGC GGCGCGGAGC ACTACGGGCG CGGCGTGCGC
GGCGTGCTGT CGAGAAAGGC GGTGATGCTC GGCGTGTATC TCGTGCTCGT CGGCGCGACC
CTGATGGTCT CGAAGATCGT GCCGGGCGGC TTCGTGCCCG CGCAGGACAA GGAGTATCTG
ATCGCGTTCG CGCAGTTGCC GAACGGCGCG TCGCTCGACC GCACCGAGAA GGTGATCCGC
GACATGGGCG CGATCGCGCT GAAGCAGCCG GGCGTCGAGA GCGCGGTGGC GTTCCCGGGG
CTGTCGGTGA ACGGCTTCAC GAACAGCTCG AGCGCGGGCA TCGTGTTCGT CACGCTGAAG
CCGTTCGATC AGCGTCACGG CAAGGCGTTG TCGGCGGGCG CGATCGCGGG CGCGCTGAAC
CAGAAGTACG CGGCGATCAA GGATTCGTTC GTCGCGGTGT TCCCGCCGCC GCCCGTGCTC
GGCCTCGGCA CGCTGGGCGG CTTCAAGATG CAGATCGAGG ATCGCGGCGC GGTGGGCTAC
GCGCGGCTCG CTGACGCCAC GAACGACTTC ATCAAGCGCG CGCAGCAGGC GCCCGAGCTG
GGCCCGCTCT TCACGAGCTA CCAGATCAAC GTGCCGCAGC TGAACGTCGA TCTCGACCGC
GTGAAGGCCA AGCAGCTCGG CGTGAACGTG ACCGACGTGT TCGACACGAT GCAGATCTAC
CTCGGCTCGC TGTACGTGAA CGACTTCAAC CGCTTCGGCC GCGTCTATCA GGTGCGCGTG
CAGGCGGACG CGCCGTTCCG CCAGCGCGCG GACGACATCC TGCAGTTGAA GACGCGCAAC
GCGGCGGGCG AGATGGTGCC GTTGTCGTCG CTCGTCACGG TGTCGCCGAC GTTCGGGCCG
GAGATGGTCG TGCGCTACAA CGCGTACACG GCGGCCGACG TGAACGGCGG GCCTGCGCCC
GGCTATTCGT CGGGCCAGGC GCAGGCGGCC GTCGAGCGGA TCGCCGCGCA GACGCTGCCG
CGCGGCGTGA AGTTCGAGTG GACCGATCTC ACGTACCAGC AGATTCTGGC CGGCGATTCG
GCGTTCTGGG TGTTCCCGAT CAGCGTGCTG CTCGTGTTCC TCGTGCTCGC CGCGCTGTAC
GAAAGCCTGA CGCTGCCGCT CGCGGTGATC CTCATCGTGC CGATGAGCAT TCTGTCGGCG
TTGACGGGCG TGTGGCTCAC GCAGGGCGAC AACAACATCT TCACGCAGAT CGGCCTGATG
GTGCTGGTGG GGCTGTCCGC GAAGAACGCG ATCCTGATCG TCGAGTTCGC GCGCGAGCTC
GAGCATGACG GCAAGACGCC GTTCGAGGCG GCCGTCGAGG CGAGCCGGCT GCGGCTGCGC
CCGATCCTGA TGACGTCGAT CGCGTTCATC ATGGGCGTCG TGCCGCTCGT GCTGTCGACG
GGCGCGGGCG CGGAGATGCG CCACGCGATG GGCGTCGCGG TGTTCTTCGG GATGCTCGGC
GTGACGCTGT TCGGCCTGAT GCTGACGCCG GTGTTCTACG TGGTGCTGCG CACGCTCGCG
GGCGGCAAGA TTCACGTCGC GCAGAAGGAT TCGGCGGGCT ACGGCGTGCC GGCTCCGGAC
GCTTGA
|
|---|
| Protein sequence | MNISKFFIDR PIFAGVLSVV ILLAGMIAMF LLPISEYPEV VPPSVIVKAQ YPGANPKVIA
ETVASPLEEQ INGVEDMLYM QSQANSDGNM TITVTFKLGT DPDKATQLVQ NRVNQALPRL
PEDVQRLGIT TVKSSPTLTM VVHLISPNDS YDMTYLRNYA LINVKDRLSR IQGVGQVQLW
GAGDYAMRVW LDPQKVAQRN LTADDVVRAI REQNVQVAAG VIGASPTLPG TPLQLSVNAR
GRLQNEDEFG DIVVKTAPDG GVTRLRDIAR IELDASEYGL RSLLDNKPAV AMAINQSPGA
NSLAISDEVR KTMAELKQDF PAGVDYKIVY DPTQFVRSSI KAVVHTLLEA IALVVIVVIV
FLQTWRASII PLIAVPVSIV GTFSLLLLFG YSINALSLFG MVLAIGIVVD DAIVVVENVE
RNIENGLTAR AATYKAMQEV SGPIIAIALT LVAVFVPLAF MSGLTGQFYK QFAMTIAIST
VISAFNSLTL SPALSAILLK GHGDKEDWLT RVMNRVLGGF FRGFNKVFHR GAEHYGRGVR
GVLSRKAVML GVYLVLVGAT LMVSKIVPGG FVPAQDKEYL IAFAQLPNGA SLDRTEKVIR
DMGAIALKQP GVESAVAFPG LSVNGFTNSS SAGIVFVTLK PFDQRHGKAL SAGAIAGALN
QKYAAIKDSF VAVFPPPPVL GLGTLGGFKM QIEDRGAVGY ARLADATNDF IKRAQQAPEL
GPLFTSYQIN VPQLNVDLDR VKAKQLGVNV TDVFDTMQIY LGSLYVNDFN RFGRVYQVRV
QADAPFRQRA DDILQLKTRN AAGEMVPLSS LVTVSPTFGP EMVVRYNAYT AADVNGGPAP
GYSSGQAQAA VERIAAQTLP RGVKFEWTDL TYQQILAGDS AFWVFPISVL LVFLVLAALY
ESLTLPLAVI LIVPMSILSA LTGVWLTQGD NNIFTQIGLM VLVGLSAKNA ILIVEFAREL
EHDGKTPFEA AVEASRLRLR PILMTSIAFI MGVVPLVLST GAGAEMRHAM GVAVFFGMLG
VTLFGLMLTP VFYVVLRTLA GGKIHVAQKD SAGYGVPAPD A
|
|---|
| |