| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_II1885 |
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| Symbol | |
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| ID | 3845359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia thailandensis E264 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007650 |
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| Strand | - |
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| Start bp | 2282208 |
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| End bp | 2285702 |
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| Gene Length | 3495 bp |
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| Protein Length | 1164 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637839186 |
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| Product | ImcF-like family protein |
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| Protein accession | YP_440079 |
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| Protein GI | 83716717 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3523] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR03348] type VI secretion protein IcmF |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0217268 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCGCA CGAGCTTGAG AGTATTCGCG GCGATTCTGA TCGCGATCCT GATCTGGTGG
GTGGGGCCGC TCTTCGCGTT CGGCATCTAT CACCCGCTCG GCCCCGTGTG GGTGCGCGAG
ATCCTCGTCG CGCTCGTGCT GATCTGGGGC TTCTGGCCGA CGCTCGCGCG GCTCTGGGCG
CGGCTCGCGA TGAGCCCGCG GCAGGTGAAG GTCGCGCCGA AGACGAAGCA GCTCGATTTC
GTCGACAAGC ATCTGCGCAA CCTCGACCAG CAGTTGAAGG AACGCTGGCG CAAGGAGCCG
CGCGGCCGCT GGAAGCGCTG GGTCGGCACG CTCACGCGCG AGCATCGCGC GATGCTGCCG
TGGTATCTGG TGCTCGGCTC CGAGGGCAGC GGCAAGACGA GCCTCGTCGC GAAGGCGGTC
AGCGTGTCCG GCTCGCTGCA GGATCGCGTA CTCGGCTCGG ACGCGACCTA CGGGCGCGGC
GACGACTTCA ACTTCCGGAT CACGCGCGAG GCCGTGTGGT TCGACGTCGG CGGCCGCTGG
AGCCTGCGTG CGGGCGCGGA CGAGGCCGAG TTCGACGCGT GGCGCAAGCT GCTGCGCGGG
ATGAGGCGGC TGCGCAAGGG CGCCCCGATC AGCGGCGTCG TGCTGTGCGT CGACGGCCTC
GACATGGTCG ATGCGCCGCT CGACGCGCGC AAGCGCCTGG CCGATTCGGT GCGCGCGCGG
CTCGAGGAAA TGCGCGAGGC GTTCGGCCAG CAGGTGCAGG TGTATGTCGC GCTGAACGGG
CTCGACCGGC TCGACGGCGC GGTGTCGACG CTGTCGCTGC TCGACGCGTC GAAGTGGGCG
AAGGGCGTCG GCTTCAGCCT GCCCGACGAC GGCGCGGAAG CCGACGCGGC GCGCGCGGAC
GCGAACTGGC AGCACGCGCT GCAAGGGCTG CAGCAGCGTG TGCAGCAGCA AGTGCTGTAT
TCGGCGCCGG CCGCGACCGA GGTGTCGATG AACCACGCGC AACTGCGCTT CGTCGAGACG
CTCAGCCGGC TGCAGAAGGC GCTCGTCGCG TGGCTGCACG TCGCGCTCGC GCCGGGCGAG
CCGCACACGG CCGCGCGGCT GCGCGGCGTG TGGCTCGGTT CGATGGCCGA GCTCGCGGAG
GCGCATCCGG CGGGCGTCGG CTCGTCGGAG CTTCCCGTGC CGTCCCGGCC GCTCAGCGAG
CTGTGGACGC CGCTCATCCG GCAGGTGTCG CTCGAGCGCG ATGCGGTGCG CCCGAGCGGC
CCGAAGTCGT GGCGCGGCCG CCTGGGCGAG GCGCTGCGAT GGGGCGCGGT GCCCCTCGTC
GCGCTGAGCC TCCTGCTGTG GTTCGGCTGG GGCTACGTCA CCGAGCGCGA TTATCTGGAC
GGCGTGTGGG CGCAGTTCAC CGAGGCGAAG CGGCTCGCGC AGGCCGAGGC GTCCTACGGC
AACGACGGCG GCTCGGCGCT CATCGAGATC GCGAACCAGA TGCGCTACGC GCAGTTGCAG
GCCGAGGACG CCGCGCAGGG GATGGCCACG CCGTACTTCG AGCACGGGCT CGTCGCCGAG
ACCGCGCGCG AGACCTACTA CCGGCACTTA CAGAAGATGC TGATGCCGGA GCTGTACAAC
GAGGTGCGGC GCACGCTCGT GTCGCAGGTC GACGGCACCC CGGGCGACAT CTATCAGACG
CTGAAGGTCT ACCTGATGCT CTGCCGTCCT GATCGACGCT CGGCGGACGA CGTCGTGCGC
TGGCTCGACG GCCGGTGGGA CGCGCTATCG GGCGGCCAGT ATTCGGACGA CGACCGCCGC
TCGCTGCTTG GGCATGTGCG CACGCTGATG TCGCTGAAGA ACGTGCCGGC GACGCCGGAG
GACGCGAACC TCGTGCGCTC GGCGCGTGCG AAGGCCGCGC AGATCCCGCT CGTCACGCGC
GTGCTGCAGC ACATCCATGC GCAGGGGCTG CCGCAGCAGG TCAACGACAT CTCGCTGTCG
CGCGCGGCGG GCTTCGAGGC GTCGATGAGC CTGCGCATGC GCAGCAACGT GCCGTCGACG
GACACCGCGG TCTCCGGCTG GTTCACGCGC GCCGGCTACA CGGATGTGTT CCTGCCGCGC
CTGCAGAAGA GCGCGCGCGC GATGCTCGAG GAGGAGAGCT GGGTGCTGCG CGACGAGACG
CTGTCGGGCA ACAGCTTCCA GATCGACGGA CTCGTGCAGA AGCTCGCCGA TTCGGCGCGC
AACCAGTTCC TTCAGGATTA CATCTCCGCA TGGCAGAACT TCCTGAACGA CGTGACGGTG
CGCGGCGTGA CGGGCCTCGA CGACGCGTCG CAGCTCGCGG CCGCGATGAT GGAGGCGCAA
TCGCCGCTCG CGAACCTGCT GCGCTTCGCC GCGCGCGAGA CGACGCTCAC GGGCGCGAGC
GACGAGGGCA ACATCGACAG CTGGATCGAT CGCCAGAAGT ACCGCTTCGA GAAGGGGCGG
CGGCAGATCG TCGGCGAGCT GAGCGGGCAG CATTACCGCA CGGTGCTGCT GCCGGAGCAC
GTGGTCGAGG AGCACTTCCA GGCGATCCGC CAGCTCGCCG CGCAGTTGAA CCGCAACAAC
ACGATTGCGA ACAATCCGCT GTCGCGCCTG TTCGAGCCGC TGTACCGGCA GCTCGGGCTC
GTCAACGGCG CGCTGCAGGC GGGCCAGGTG CTGCCCGCGC AGTACGACGC GTTCTCGCGG
CTCAAGGAGA CGGCCGCGCG TCAGCCGGAG CCCGTGCGCG GGATCATGCT CGACCTCGTG
AGCAGCGGCA GCACGATGAC GACGCGCGAA TCGGGCGCGC TGCTCAATCG CGGCGCGGCG
GGCGCGACGA AGATGGTCTG CGATCAGGGC TTCACGGGCC GCTATCCGAT GCGCCGCAAC
GCGCAGGCGG ATGCGGGCGT CGAGGACTTC GAACGATTGT TCAGCGCGCA AGGGCTGATG
GCGACGTACT TCCGCGATCA CCTCGCCGCG TATGTCGACA CGTCCGCGAA GCCGTGGCAG
GCGCTGCGCT CGAACGGCGG GCCGAACGGG ATGGTCAGTC AGTCCGTCCT GAACTCGTAC
GAGACGGCAG ATCGCATCCG CGGCGCGATG CTCGACGATT CGGGGCACCT GCGCGTGTCG
ACCGTGCTGC GCTTCATCGA CATGGATTCG CAGTTGTCCG AAGCGCAGTT GAGCGTCGCC
GGCCAGACAG TGCGCTTCGC GCACGGCGTG ACGTCGCCGC ACCGGGTCGA CTGGACCAAT
CAGAACACGC AGCTCGCGAT CAAGCTGCAG CTGAAGTCCG TCGACGGCCG GATGACGACG
CTGCAGTTCG ACGGGCCGTG GGCGCTGTTC CGCTTCTTCG ACGCGGGACA GGCGGTGGGC
GGCACGGGCA CGGCGGACCG GCGCGAGCGG CTCTATCAGA CGAGCCTCGG CACGGTCCGG
ATCGAATGGC AGGCGCTCAC GCTGCCGTCG CCGATATGGT CGGGCATCCT GCAGTCGTTC
AGGTGTCCGT CGTGA
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| Protein sequence | MIRTSLRVFA AILIAILIWW VGPLFAFGIY HPLGPVWVRE ILVALVLIWG FWPTLARLWA
RLAMSPRQVK VAPKTKQLDF VDKHLRNLDQ QLKERWRKEP RGRWKRWVGT LTREHRAMLP
WYLVLGSEGS GKTSLVAKAV SVSGSLQDRV LGSDATYGRG DDFNFRITRE AVWFDVGGRW
SLRAGADEAE FDAWRKLLRG MRRLRKGAPI SGVVLCVDGL DMVDAPLDAR KRLADSVRAR
LEEMREAFGQ QVQVYVALNG LDRLDGAVST LSLLDASKWA KGVGFSLPDD GAEADAARAD
ANWQHALQGL QQRVQQQVLY SAPAATEVSM NHAQLRFVET LSRLQKALVA WLHVALAPGE
PHTAARLRGV WLGSMAELAE AHPAGVGSSE LPVPSRPLSE LWTPLIRQVS LERDAVRPSG
PKSWRGRLGE ALRWGAVPLV ALSLLLWFGW GYVTERDYLD GVWAQFTEAK RLAQAEASYG
NDGGSALIEI ANQMRYAQLQ AEDAAQGMAT PYFEHGLVAE TARETYYRHL QKMLMPELYN
EVRRTLVSQV DGTPGDIYQT LKVYLMLCRP DRRSADDVVR WLDGRWDALS GGQYSDDDRR
SLLGHVRTLM SLKNVPATPE DANLVRSARA KAAQIPLVTR VLQHIHAQGL PQQVNDISLS
RAAGFEASMS LRMRSNVPST DTAVSGWFTR AGYTDVFLPR LQKSARAMLE EESWVLRDET
LSGNSFQIDG LVQKLADSAR NQFLQDYISA WQNFLNDVTV RGVTGLDDAS QLAAAMMEAQ
SPLANLLRFA ARETTLTGAS DEGNIDSWID RQKYRFEKGR RQIVGELSGQ HYRTVLLPEH
VVEEHFQAIR QLAAQLNRNN TIANNPLSRL FEPLYRQLGL VNGALQAGQV LPAQYDAFSR
LKETAARQPE PVRGIMLDLV SSGSTMTTRE SGALLNRGAA GATKMVCDQG FTGRYPMRRN
AQADAGVEDF ERLFSAQGLM ATYFRDHLAA YVDTSAKPWQ ALRSNGGPNG MVSQSVLNSY
ETADRIRGAM LDDSGHLRVS TVLRFIDMDS QLSEAQLSVA GQTVRFAHGV TSPHRVDWTN
QNTQLAIKLQ LKSVDGRMTT LQFDGPWALF RFFDAGQAVG GTGTADRRER LYQTSLGTVR
IEWQALTLPS PIWSGILQSF RCPS
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