| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BTH_I1276 |
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| Symbol | secD |
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| ID | 3849029 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Burkholderia thailandensis E264 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007651 |
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| Strand | - |
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| Start bp | 1424585 |
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| End bp | 1426606 |
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| Gene Length | 2022 bp |
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| Protein Length | 673 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637840948 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_441823 |
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| Protein GI | 83719918 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAATCGTT ATCCAATCTG GAAATATGTG GTGATGGTCG TGGCGCTCGC CATCGGCTTT
CTGTACACAT TGCCCAACTT CTTCGGCGAA GCGCCGGCGG TGCAGGTATC GAGCGGCAAG
GCCACGGTCA AGCTCGGCGC CGATACGCTC GCGCAGGTCG AGGCAGCGCT GAAGGCCAAC
CAGGTCGCGG CCGACGACGT CACGTTCGAC AACTCCAGCG CCAACGCGAC GATCCGCGTG
CGCCTGAAGG ACACCGACAC GCAGTTGCGC GTGAAGGACA TGCTGCAGAA GACGCTGAAC
GCCGATCCGA ACGATCCGCA GTACATCGTC GCGCTGAACC TGCAGAGCGC GTCGCCGCGC
TGGCTGACCG CGCTGCACGC GCTGCCGATG TATCTCGGCC TCGATCTGCG CGGCGGCGTC
CACTTCCTGC TGCAAGTCGA CATGACGGGC GCGCTGACGA AGAAGCTCGA TTCCGACGCG
TCCGACGCCC GCACGCAGCT GCGCGACAAG GGCATCCGCG ACGGCGGCGT CGCCCGCGTC
GACCAGACTG TCGTCGCGAA CTTCGCCGAC CAGGACACCG CCGAGCAGGC GCGCAAGCTG
CTCGTCTCGT CCGTCTCCGA ACTCCAGTGG GCGACGCAGC CGGGCGGCGG CGGCTATCAG
GTCGTCGGCA CGTTCACGCC GGCCGTCCAG AAGGCCGTCG AGGAAGCGGC GCTCAAGCAG
AACCTGACGA CGCTGCACAA CCGCGTCAAC GAGCTCGGCG TGTCCGAGCC GATCCTCCAG
CAGCAGGGCA ACGACCGCAT CGTCGTCGAG CTGCCGGGCG TGCAGGACAC CGCGAAGGCG
AAGGACATCA TCGGCCGCAC GGCGACGCTC GAGGCGCGCC TGGCCGATCC GCTCAACACG
CATCCGAATC CCAACGATCC GGTGCCGCCG GGCGAGGAAC TGTTCACGCA GGGCAACCAG
GTGCCGGTGC TGCTCAAGAA GCAGGTGATC TTCACGGGCG ACCGCATCAT CGACGCATCC
GCGGGCTTCG ACGAGCATCA GCGTCCGTCC GTCAACATCC GCCTCGATTC GGCGGGCGGC
CGCGCGGTGC GCGCGGTGTC GCGCGAGAAC ATCGGCAAGC CGATGGCGAT GGTGCTGTTC
GAGAAGGGCA AGGGCGAAGT GCTGACCGTC GCGACGATCC AGTCGGAGCT CGGCGACCGC
TTCCAGATCA CGGGCCAGCC GACTCCGCAG GCCGCCGCCG ATCTCGCGCT GCTGCTGCGC
GCGGGCTCGC TCGCCGCGCC GATGGACATC ATCGAGGAAC GCACGATCGG CCCGAGCCTC
GGCGCGGACA ACATCCGGAT GGGCTTCCAT TCGGTGATCT GGGGCTTCGT CGCGATCGCC
GTGTTCATGA TCGCGTACTA CATGCTGTTC GGCGTCGTGT CGGTGCTCGG CCTGTCGGTG
AACCTGCTGC TGCTCGTCGC GGTGCTGTCG CTGATGCAGG CGACGCTCAC GCTGCCCGGC
ATCGCGGCCA TCGCGCTCGC GCTCGGCATG GCGATCGACT CGAATGTGCT GATCAACGAG
CGCATCCGCG AAGAACTGCG CCGCGGCGCA TCGCCGCAGA TCGCGATCCA GGAAGGCTAT
GCGCATGCAT GGGCGACGAT TCTCGATTCG AACGTGACGA CGCTGATCGC GGGCCTCGCG
CTGCTCGCGT TCGGCTCGGG CCCGGTGCGC GCGTTCGCGA TCGTGCACTG TCTCGGCATC
CTGACGTCGA TGTTCTCCGC AGTGTTCTTC TCGCGCGGCC TCGTGAACCT CTGGTACGGC
GGGCGCAAGA AGCTGCAGTC GCTCGCGATC GGCCAGGTGT GGCGCCCCGC CGAGGCCGGC
GCCGCGCCGC AGCTCGGCCA GGACGCGCGC GCGAACGCGC CGCAGCCCGG CGCACGCGTG
GCCGCGCCGA AGCAGCCGGC GGGCGCGCCG CGCACCGGCA AGCCGGTCGC GCGCCGCCGC
TCGGGCCCGG GCGTGCCGCC CAAGCAGGGC TCGTCCAACT AA
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| Protein sequence | MNRYPIWKYV VMVVALAIGF LYTLPNFFGE APAVQVSSGK ATVKLGADTL AQVEAALKAN
QVAADDVTFD NSSANATIRV RLKDTDTQLR VKDMLQKTLN ADPNDPQYIV ALNLQSASPR
WLTALHALPM YLGLDLRGGV HFLLQVDMTG ALTKKLDSDA SDARTQLRDK GIRDGGVARV
DQTVVANFAD QDTAEQARKL LVSSVSELQW ATQPGGGGYQ VVGTFTPAVQ KAVEEAALKQ
NLTTLHNRVN ELGVSEPILQ QQGNDRIVVE LPGVQDTAKA KDIIGRTATL EARLADPLNT
HPNPNDPVPP GEELFTQGNQ VPVLLKKQVI FTGDRIIDAS AGFDEHQRPS VNIRLDSAGG
RAVRAVSREN IGKPMAMVLF EKGKGEVLTV ATIQSELGDR FQITGQPTPQ AAADLALLLR
AGSLAAPMDI IEERTIGPSL GADNIRMGFH SVIWGFVAIA VFMIAYYMLF GVVSVLGLSV
NLLLLVAVLS LMQATLTLPG IAAIALALGM AIDSNVLINE RIREELRRGA SPQIAIQEGY
AHAWATILDS NVTTLIAGLA LLAFGSGPVR AFAIVHCLGI LTSMFSAVFF SRGLVNLWYG
GRKKLQSLAI GQVWRPAEAG AAPQLGQDAR ANAPQPGARV AAPKQPAGAP RTGKPVARRR
SGPGVPPKQG SSN
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