| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BT9727_2304 |
|---|
| Symbol | cpdC |
|---|
| ID | 2858601 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus thuringiensis serovar konkukian str. 97-27 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_005957 |
|---|
| Strand | + |
|---|
| Start bp | 2391766 |
|---|
| End bp | 2393718 |
|---|
| Gene Length | 1953 bp |
|---|
| Protein Length | 650 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 35% |
|---|
| IMG OID | 637513728 |
|---|
| Product | 2',3'-cyclic-nucleotide 2'-phosphodiesterase |
|---|
| Protein accession | YP_036630 |
|---|
| Protein GI | 49477742 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0737] 5'-nucleotidase/2',3'-cyclic phosphodiesterase and related esterases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 24 |
|---|
| Plasmid unclonability p-value | 0.199314 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCAAAAAA TGAAATGGAA GAACTATTTA TGTTATTTTG TTATTCTTAT ACTTCTTGGA
ACAGCAGTAA CAGTCAAACC ATCTATCTCG AAAGCTGAGG AATCTGATGT TAATATTACA
CTGTTAGGTA CTGCAGATAT TCATGGTAGA TTTATGCCTT GGGATTATGC GCTTGATGGT
GCAAATACGA GTGGAAGTTT AACGCAGCTT TATACGGTTA TAAAGAAGGT GCGTCAGGAA
AATCCCAATA CCATATTAGT AGATGCTGGG GATACAATTC AAGGAAATTC AGTAGAGTTA
TTCAATGATC AGCCGCAATC GCCAATAATG GTAGCGATGA ATGCAATGGG ATATGATGCC
TGGGCATTTG GAAATCATGA ATTTAACTTT GGATTAGATA CGTTGAAAAA AGTTAGTGAG
CAATATAAGG GAAAGACATT AGCAGGAAAT ATTTATAAGG AAAATGGAGA GCGCTTTCTT
CCTGCATATA CGATTGTTGA AAAAGGTGGA ATTAAAGTTG GGATTATTGG TATGAATACA
CCAATGATTA GTGATTTCGA AAAAGGGACA GATCATTTGG ATGGATTGGT AGTGAAAAAT
CCAGTAGAAG AGACAAAAAA GGCAATTAAA GAATTAGAGG GTAAAGTAGA TGTAATGGTA
GGGGTTATGC ATATGGGATT AGAAAATGAG AATGGAATCC CTGGTACTGG GGTTCAAGAT
ATTGCGAATG CTTGTCCGGA ATTAAGTGCT ATTTTTGCAG CTCATATGCA TAAGCTTGTA
AAAAAAGAAG TTGTAAATGG TGTCATTATC ACGGAACCAG ATAAATATGG AACACATATC
TCACGTATTG ACCTTACTTT TACAAAGCAA GATGGGAAGT TGGTTTTAAA AAATAAAGCC
GCTACCGCTA TACCTGTAAA AAATACTGAT GGAACAACAG TAGTATCTGA TCCTACACTT
GAAGACACAC TGACACCTTT TCACGAGTAT GCGAGGGGAG ATGCAAATGT TATAGTCGCT
CAATTAAAGG GTAGAAACCT TGTTCCTGAA AATGAAATAA AGGGTATTCC AAGTGTGCAG
ATTCAAGAGA CACCTTTATC AGATTTCTTT CATGAGGTCA TGCTCTATTA CAGCAAAGCA
GATGTAGTAG CTCATCAAAT TGATAACGAT AATGCCCGTT TGGATGTAGG TCCTATTAAG
AAAAAAGATA TTGCATATAA TTATCAATAT GCTTTGGGTG AAATTACGGT ATATAAGGTA
ACTGGGAAAG ACTTAAAAGA CTATATGGAA TGGGCAGCAG GGTACTTTAA TTCATCTCGT
CCTGGAGATG TAACAGTTAG TTTTGATAAA ACCCGTCGTG CGTCTAAATA CAGTACGAAT
GATTTCTTTG GAGGCGTAAA ATACGAAATT GACTTAACAA AACCATATGG AAGTAGAATT
ACAAATTTAC ATTCTATTCG TACAAATAAA CCAATCAAAA CGAACGATGT TATGACGCTG
GGAATGAATG CATATAGAAT GGAGGCTCTT CAGGCAAAAG GTGGAGCTTT AGAGGGGCGT
AAGTTTGAAC AAATTTGGTC ATCTAAACAA GAGAATGCAT TCGGGGAAAC TGGTGGAACC
ATTCGTAATC TTGCTATTAC ATATTTAAAA GAGGTGAAGA ACGGTGTTTA CACACCAAAA
GTTATGCATA ATTGGAAAAT TACTGGCGTG AATACACATT CTTCAGAGCA TAAGGCTGTA
GTAGATCTTG TGAATAAAGG GATTTTAGAA ATTCCAAAAA CTGAAGATGG AAAATATACA
AACATAGCAT CTATAAATAC TAAAGATTCA ATTACAAAAG AGGAAATTGT CGCACTCTCA
CAAAAAGTAA ATATTAATCC AAATCAGTTT AAGCATATAA AAACGAAAGG TGAATTTTAC
AAAAAACTTA GTAGAATTGT AAAAAAAATA TAA
|
|---|
| Protein sequence | MQKMKWKNYL CYFVILILLG TAVTVKPSIS KAEESDVNIT LLGTADIHGR FMPWDYALDG
ANTSGSLTQL YTVIKKVRQE NPNTILVDAG DTIQGNSVEL FNDQPQSPIM VAMNAMGYDA
WAFGNHEFNF GLDTLKKVSE QYKGKTLAGN IYKENGERFL PAYTIVEKGG IKVGIIGMNT
PMISDFEKGT DHLDGLVVKN PVEETKKAIK ELEGKVDVMV GVMHMGLENE NGIPGTGVQD
IANACPELSA IFAAHMHKLV KKEVVNGVII TEPDKYGTHI SRIDLTFTKQ DGKLVLKNKA
ATAIPVKNTD GTTVVSDPTL EDTLTPFHEY ARGDANVIVA QLKGRNLVPE NEIKGIPSVQ
IQETPLSDFF HEVMLYYSKA DVVAHQIDND NARLDVGPIK KKDIAYNYQY ALGEITVYKV
TGKDLKDYME WAAGYFNSSR PGDVTVSFDK TRRASKYSTN DFFGGVKYEI DLTKPYGSRI
TNLHSIRTNK PIKTNDVMTL GMNAYRMEAL QAKGGALEGR KFEQIWSSKQ ENAFGETGGT
IRNLAITYLK EVKNGVYTPK VMHNWKITGV NTHSSEHKAV VDLVNKGILE IPKTEDGKYT
NIASINTKDS ITKEEIVALS QKVNINPNQF KHIKTKGEFY KKLSRIVKKI
|
|---|
| |