| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BT9727_0048 |
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| Symbol | mfd |
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| ID | 2858253 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bacillus thuringiensis serovar konkukian str. 97-27 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_005957 |
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| Strand | + |
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| Start bp | 54532 |
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| End bp | 58068 |
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| Gene Length | 3537 bp |
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| Protein Length | 1178 aa |
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| Translation table | 11 |
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| GC content | 36% |
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| IMG OID | 637511403 |
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| Product | transcription-repair coupling factor |
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| Protein accession | YP_034406 |
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| Protein GI | 49479988 |
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| COG category | [K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
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| TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGAAAATGA TAGGTTTATT AGAGCAATTT TATAAAAATG AAGAGATCCA ATCGGTCATT
AATGGACTAG AAGATGGTTT AAAAGAGCAA CTTGTATCAG GTATGGCAAC ATCTTCTCGT
TCGTTATTAA TGGCGGCCTT ATATAAAAAA ACAAAAAAAT CACAACTTAT TGTGACGCAT
AATTTATATC AAGCACAAAA AGTACATGAA GATTTAGTGG CGTTACTTGG TGAAAAGGAT
GTATGGCTAT ATCCAGTAAA TGAATTGATA GCATCAGAAC TTGGTGTTGC AAGCCCAGAA
TTGAAGGCGC AACGTATTGA AGTGTTAAAT CGCTTAGCTG CAGGAGAACA TGGGATTATT
GTAGCACCAG TTGCAGGACT ACGCAGATTT TTACCAATGA AAGAGTTGTG GAAGCAAAGG
CAAATCGAAA TCAATCTAGG GCAAGAGATT GATTTAGATA CATTCTTGCA TACTTTACAT
CATATCGGCT ATGAGCGTAA GTCTATGGTA GAAGCTCCTG GAGAATTTAG TTTACGCGGG
GGAATATTAG ATATTTATCC ACTAACTGAA GAGCTACCAT TTCGTATTGA ATTTTTCGAT
ACAGAAGTTG ATTCTATTCG ATTATTTGAT GTGGATGAAC AGCGCTCTCA AGATAAAAAA
GAAAGTGTTA GATTTGGTCC AGCAACAGAG TTTTTATTTT CGCAGGAAGA ATTGAAATCG
GGAATTAAGC ATCTTGAAGA AGGTCTGACT AAGACGATGC AAAAACTTTC CGATGATAAG
TTGAAGACTA CAGTGCTTGA GACGGTAAGT CATGAAATTG AGATGTTAAA AAACGGGCAA
AGTATAGAAC AGATGTTTAA ATATTTATCT ATTTTCTATA ACGAACCTGC TAGTCTGATA
GATTATTTAC CAGAAGATGG TGTTGTGATT TTAGATGAAA TTTCACGTAT TCAAGAAACA
GCATCTCATC TTGAATCAGA AGAGGCGGAA TGGTATATAT CCCTTCTTGG TGAGGGAACA
ATTATTCAAG ATTTATCTTT CTCTCATTCG TTTGAAGAAT TTCTTCATCA TAAAAAAAGA
AGTTTTGTAT ATTTAACGTT ATTCTTACGT CATATAGCGC ATACACATCC CCAAAACATT
GTGAATGTGA CATGTAAAAC AATGCAAGAT TTCCATGGGC AGATGCAGTT GTTGAAAACT
GAAATTGATA GATGGAACGA AGGGCATTTT ACGACCGTTG TGCTAGGTAC AGATGATGAG
CGTGTGAAAA AACTACAACA TATTTTAAGT GATTATGATA TTGATGCAGA TATTGTAGAG
GGCACAGATA TATTATTGCC TGGAAGGTTA CAAATTGCTG TAGGTGATTT ACATGCAGGG
TTTGAAATGC CGATGCAAAA GCTTGTTGTC ATTACTGAAA AAGAGCTTTT TCATAAGAAA
GTTAAAAAAT CACAACGTAA GCAAAAGTTA TCGAATGCTG AACGCATTAA AAGTTATTCG
GAATTAAAAG TTGGGGATTA TGTAGTTCAT GTAAATCATG GTATAGGTAA ATTTTTAGGT
ATTGAGACAT TAGAGATTAA CGGTGTTCAT AAAGATTATT TGAATATTAA ATATCAAGGT
AATGATAAGT TATACGTTCC AATTGAACAA ATTGACCAAG TGCAAAAATA TGTAGGATCT
GAAGGCAAGG ATCCGAAAGT TTATAAATTG GGCGGAAACG ATTGGAAAAA GGTCAAAACA
AAAGTTGAAA AATCTGTACA AGACATTGCG GATGACCTCA TTAAACTCTA TGCTGAGCGC
GAAGCTTCAA AGGGTTATGC ATATACACCA GATACGGCAG AACAACAAGA ATTTGAGTCT
TCTTTCCCGT ATCAAGAGAC AGAGGATCAA TTACGTTCTA TTGAAGAGAT TAAAAAGGAT
ATGGAACGCG GACGTCCGAT GGATAGGCTT CTTTGTGGTG ATGTAGGATA TGGAAAGACG
GAAGTAGCTA TTCGTGCGGC GTTTAAAGCA ATTATGGATG AAAAACAAGT TGCAATTTTA
GTGCCGACAA CGATCCTTGC ACAACAACAC TATGAAACAA TTCGAGAGCG TTTTCAAGAT
TATCCAATCA ATATAGGATT ATTAAGTAGA TTCCGTACGA GAAAGCAGCA AAATGAAACA
ATTAAAGGTT TAAAAGATGG CACGGTAGAT ATTGTAATCG GAACGCATCG TATTTTATCT
AAAGATGTTA CTTATAAAGA TTTAGGTCTT CTTATTATTG ATGAAGAACA AAGATTTGGC
GTAACACATA AAGAAAAAAT TAAACAATTA AAAGCAAATG TTGACGTATT AACATTAACG
GCAACCCCGA TCCCGCGTAC GCTTCATATG TCTATGCTTG GTGTACGTGA TTTATCTGTT
ATTGAGACGC CGCCGGAAAA TCGTTTCCCA GTTCAAACAT ATGTAGTTGA GTATAATCCA
GCGTTAATGC GAGAGGCGAT AGAACGCGAG CTTGCAAGAG GTGGGCAAGT TTACTTCCTA
TATAATCGTG TGGAGGATAT CGAACGAAAA GCAGATGAAA TTTCGATGTT AGTTCCAGAT
GCACGTGTCA CTTATGCACA TGGGAAAATG AACGAAAGTG AATTAGAGTC TGTTATGCTA
TCGTTTTTAG AAGGGCAGCA TGATGTTCTT GTAAGTACAA CGATTATTGA GACAGGTGTA
GATATTCCGA ATGTAAATAC ATTAATTGTA TTTGATGCAG ATCGTATGGG ATTATCGCAG
TTGTATCAGC TTCGTGGGCG TGTTGGACGT TCTAATCGTG TTGCATATGC TTACTTTGCA
TACAAACGAG ATAAAGTGTT ATCAGAAGTT GCGGAGAAGC GTCTGCAAGC CATTAAGGAG
TTCACAGAGC TTGGGTCTGG TTTCAAAATT GCGATGCGAG ATTTATCAAT TCGTGGTGCA
GGTAACTTGT TAGGAGCTGA ACAACATGGA TTTATTGATT CTGTCGGATT TGATTTATAT
TCTCAAATGT TAAAAGACGC AATTGAACAG CGTAGAGGAA CAGACGGAGT TGAAAATACA
GTTAATGTTG AAATTGATTT AGAAGTAGAT GCATATTTAC CAGATGCTTA TATTTCGGAT
AGTAAACAAA AAATTATGAT GTATAAACAA TTTAGAGGTG TTTCTGCGAT TGAAGATATT
GAAGAGTTGC AGGAAGAGAT GATAGATAGA TTTGGTGATT ACCCGCAAGA AGTTGGTTAC
TTATTACAAA TTGCAAATAT TAAAGTATTG GCAATGAAAG AACAAATTGA ATTAATTAAG
CAAAATAAAT TTGAAGTAAC AATTCTGTTC TCAGAACAAG CGAGTCAAAA TATTGATGGT
GGAAAATTAT TCATGCTCGG AAATAGTTTT GGACGTATGA TCGGTTTAGG AATGGAAGGA
TCACAATTGA AAATCGTCAT GAAAACAAAT GGCTTAGAGA CATCGAAGTG GTTAACAATT
GCTGAAAATT TATTAAAAGG CTTGCCAGAT GTAAAAAAAG AAGTCATAAA TGCCTAA
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| Protein sequence | MKMIGLLEQF YKNEEIQSVI NGLEDGLKEQ LVSGMATSSR SLLMAALYKK TKKSQLIVTH
NLYQAQKVHE DLVALLGEKD VWLYPVNELI ASELGVASPE LKAQRIEVLN RLAAGEHGII
VAPVAGLRRF LPMKELWKQR QIEINLGQEI DLDTFLHTLH HIGYERKSMV EAPGEFSLRG
GILDIYPLTE ELPFRIEFFD TEVDSIRLFD VDEQRSQDKK ESVRFGPATE FLFSQEELKS
GIKHLEEGLT KTMQKLSDDK LKTTVLETVS HEIEMLKNGQ SIEQMFKYLS IFYNEPASLI
DYLPEDGVVI LDEISRIQET ASHLESEEAE WYISLLGEGT IIQDLSFSHS FEEFLHHKKR
SFVYLTLFLR HIAHTHPQNI VNVTCKTMQD FHGQMQLLKT EIDRWNEGHF TTVVLGTDDE
RVKKLQHILS DYDIDADIVE GTDILLPGRL QIAVGDLHAG FEMPMQKLVV ITEKELFHKK
VKKSQRKQKL SNAERIKSYS ELKVGDYVVH VNHGIGKFLG IETLEINGVH KDYLNIKYQG
NDKLYVPIEQ IDQVQKYVGS EGKDPKVYKL GGNDWKKVKT KVEKSVQDIA DDLIKLYAER
EASKGYAYTP DTAEQQEFES SFPYQETEDQ LRSIEEIKKD MERGRPMDRL LCGDVGYGKT
EVAIRAAFKA IMDEKQVAIL VPTTILAQQH YETIRERFQD YPINIGLLSR FRTRKQQNET
IKGLKDGTVD IVIGTHRILS KDVTYKDLGL LIIDEEQRFG VTHKEKIKQL KANVDVLTLT
ATPIPRTLHM SMLGVRDLSV IETPPENRFP VQTYVVEYNP ALMREAIERE LARGGQVYFL
YNRVEDIERK ADEISMLVPD ARVTYAHGKM NESELESVML SFLEGQHDVL VSTTIIETGV
DIPNVNTLIV FDADRMGLSQ LYQLRGRVGR SNRVAYAYFA YKRDKVLSEV AEKRLQAIKE
FTELGSGFKI AMRDLSIRGA GNLLGAEQHG FIDSVGFDLY SQMLKDAIEQ RRGTDGVENT
VNVEIDLEVD AYLPDAYISD SKQKIMMYKQ FRGVSAIEDI EELQEEMIDR FGDYPQEVGY
LLQIANIKVL AMKEQIELIK QNKFEVTILF SEQASQNIDG GKLFMLGNSF GRMIGLGMEG
SQLKIVMKTN GLETSKWLTI AENLLKGLPD VKKEVINA
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