| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BRA1162 |
|---|
| Symbol | hpcD |
|---|
| ID | 1165615 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Brucella suis 1330 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004311 |
|---|
| Strand | - |
|---|
| Start bp | 1162206 |
|---|
| End bp | 1162598 |
|---|
| Gene Length | 393 bp |
|---|
| Protein Length | 130 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 637332249 |
|---|
| Product | 5-carboxymethyl-2-hydroxymuconate delta isomerase |
|---|
| Protein accession | NP_700315 |
|---|
| Protein GI | 23500875 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG3232] 5-carboxymethyl-2-hydroxymuconate isomerase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.837994 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGCATT TTACAATGGA GTATTCCTCC AATCTCGATG GCACGGTTGA TTTCGACGGC
CTGTGCCGCG CCGTGCACGA GACGATTTTG GATACGGGGC TTTTCGAGTT GGGCGCGGTG
CGTGTGCGCG CCTTTCGCGC CGAGGCTTAT GCCGTTGCCG ACCCGTTGCC GCAGAATGGT
TTCATCGACA TGAGCTTTCG CATTGGCGTG GGGCGCAGCG ATGAGGAAAA GCGCAAGACC
GGCGAAGCAA TCTTTGCCAC CGTTACCGAA TTTCTGGCCC CGCTGTTCGC CACGCCGCAT
TTCGCGCTGA CGCTGGAGAT CCGCGAGATC GATCCGCAAC TTAGCTGGAA GAAAAACGCC
ATTCATCCCC GCCTGCGCCA GAAGCAGGCC TGA
|
|---|
| Protein sequence | MPHFTMEYSS NLDGTVDFDG LCRAVHETIL DTGLFELGAV RVRAFRAEAY AVADPLPQNG
FIDMSFRIGV GRSDEEKRKT GEAIFATVTE FLAPLFATPH FALTLEIREI DPQLSWKKNA
IHPRLRQKQA
|
|---|
| |