| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BR2062 |
|---|
| Symbol | trmE |
|---|
| ID | 1167765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Brucella suis 1330 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004310 |
|---|
| Strand | - |
|---|
| Start bp | 1987123 |
|---|
| End bp | 1988451 |
|---|
| Gene Length | 1329 bp |
|---|
| Protein Length | 442 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 53% |
|---|
| IMG OID | 637331001 |
|---|
| Product | tRNA modification GTPase TrmE |
|---|
| Protein accession | NP_699037 |
|---|
| Protein GI | 23502910 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0486] Predicted GTPase |
|---|
| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00450] tRNA modification GTPase TrmE |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 2 |
|---|
| Plasmid unclonability p-value | 0.00847213 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGAGA TCGGTTCTTA TCACGATACG ATTTTTGCAT TATCGAGCGG ACGCTTGCCC
TCAGGGGTCG CGGTCATTCG CATTTCCGGC CCAAAAACTC GATTCGTTTA CGAAACAATC
TGCCAAGCAA TTCCGGAACC GCGCCATGCC GCATTGCTTA CATTCCGTAG CCGAAATGGT
GACGCCATTG ATCGCGGCCT CACTCTGTTT TTCCCTGCTC CTCATAGTTT TACTGGGGAA
GACTGCGCCG AATTTCATTT GCACGGCGGT AAGGCCGTTG TGGAAAAGAT GCTTGCGGTG
TTGGGCGAAC TGCCGGGATG CCGAATTGCG GAGGCTGGTG AATTTACGCG ACGTGCTTTT
GCCAATGGCA AGATGGACTT GACGATTGCA GAAGGTCTGG CCGACCTCAT TGCTGCGGAA
ACCGAGGGGC AGCGACGGCT TGCAATGCAA GTGGCTTCCG GTAATCAGCG CAAACTATAT
AGTGAGTGGC GCCAGCGACT TATCAATGCG CGGGCTTTCA TTGAAGCTGA ACTGGATTTT
GCCGATGAAA GCGACGTACC CGGTTCTGTT TCCATGCAGG TCTGGCAACA GCTTTCGGCG
CTCAAACATG AAATCGAGCA CCATATCGCA AGCGGTAAGC GCGCTGCGAT GCTGCGGGAT
GGATTGCATG TTGTTATTGT CGGCGCGCCA AATGCCGGTA AATCCAGCTT GCTTAATTTT
CTAGCCGGGC GCGATGTTGC GATCATTTCC AAAGAAGCTG GTACGACGCG CGATCTTCTG
GAAGTGAAAC TCGATCTCGG CGGTATCCCG GTTTATGTCA CCGATACGGC GGGTCTTCGC
GAAACGGATA GTGTCGTTGA GAAGATCGGC ATTGAGCGTG CGCGTGCCCG GATGGCCGAA
GCCGATCTGG TGCTCTCGCT GGAAGATATG AGCGGACCTG TATCTGTTAC CGTTGAGAAA
ATCGAAGCAG AAACCTGGCT GATCGGTACC AAGGCCGACC TCGGTGGAAG TGCTTCGGGC
TTGTGGAAAT ATCACATTTC CACCATGACT GGCAGTGGTC TGGAACAATT GCTGGACGCT
CTACAGGCTT TTGCTGAAGC GAAGATCGGC CAGATTGAAG ATGCTGTTCC TACCCGGCAG
CGCCATATCA ACCTGTTGCG GGCAACGATT GAAGAAATCG AAAAAGCAAT TGAGGGTGAC
GATCTTCCAT TGGAGTTAAG AGCCGAGAAT ATGCGGCTTG CTTCGCAATT CCTTGGACGG
ATCACGGGCG ATGTGGATGT AGAGGAAATT CTGGACGTTA TTTTCTCGCA ATTCTGCATC
GGGAAGTGA
|
|---|
| Protein sequence | MSEIGSYHDT IFALSSGRLP SGVAVIRISG PKTRFVYETI CQAIPEPRHA ALLTFRSRNG
DAIDRGLTLF FPAPHSFTGE DCAEFHLHGG KAVVEKMLAV LGELPGCRIA EAGEFTRRAF
ANGKMDLTIA EGLADLIAAE TEGQRRLAMQ VASGNQRKLY SEWRQRLINA RAFIEAELDF
ADESDVPGSV SMQVWQQLSA LKHEIEHHIA SGKRAAMLRD GLHVVIVGAP NAGKSSLLNF
LAGRDVAIIS KEAGTTRDLL EVKLDLGGIP VYVTDTAGLR ETDSVVEKIG IERARARMAE
ADLVLSLEDM SGPVSVTVEK IEAETWLIGT KADLGGSASG LWKYHISTMT GSGLEQLLDA
LQAFAEAKIG QIEDAVPTRQ RHINLLRATI EEIEKAIEGD DLPLELRAEN MRLASQFLGR
ITGDVDVEEI LDVIFSQFCI GK
|
|---|
| |