| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMASAVP1_A2137 |
|---|
| Symbol | |
|---|
| ID | 4681173 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei SAVP1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008785 |
|---|
| Strand | - |
|---|
| Start bp | 2114124 |
|---|
| End bp | 2119283 |
|---|
| Gene Length | 5160 bp |
|---|
| Protein Length | 1719 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 639846401 |
|---|
| Product | linear gramicidin synthetase subunit C |
|---|
| Protein accession | YP_993450 |
|---|
| Protein GI | 121598680 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins
[COG3208] Predicted thioesterase involved in non-ribosomal peptide biosynthesis |
|---|
| TIGRFAM ID | [TIGR01720] non-ribosomal peptide synthase domain TIGR01720
[TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGTGTGCG ATGTCGCGTG GGCCGGCGCG CCCGATGCGG CGCTCGACGC CTTCTTCGCC
GACGCGCGGC GCGGCGTGCG TCTCGCCGAC GGGCCGCTCT TCGTCGCGGC GCTGGTCGCG
GCCGGCGCGA CGGGGCGGGG CCGCCTGCTG CTGATCGGGC ATCACGCGGT GGTCGACGGC
GTATCGTGGC GCGTCATCGT CGCGGACCTG CGGCGGACGT TCGCGCAATG GCCGGCGCTG
CGCCCGGACG CGCCCGGGCC GGCGAGCGAT GCGTATCAGG CGTGGGCGCG CGCGCTCGTC
GCGGCGGCCG ACAGCCCGGC GCTGCACGCG GAGCGCGCGC ACTGGCTGCG CGTGCTCCGC
GCGCCGGCCC CGGCGCTGCG GCTCGATCGC GCCGCCGGCG GCGACGCCAC GCGCCGCGCG
ACGCGCATCG GGGCGGTGAG CCTGAACGCG GCCGATACCC GCGCGCTGTT GGCCGACACG
CACCGCGCGT ACCGGACGCA GACCATCGAG CTGCTGCTCG CCGGGCTGCT GCTCGCGTTC
CGCCGCTGGC AGGGCCATGA CGCGCTGCGC ATCGCGCTCG AGGGCCACGG GCGCGAGGCC
GACGCGCTCG CGCACTACGG CGCCGAGCGC GGGTTACCCG ACGTGGGCGA GACGGTGGGC
TGGTTCACGA GCTATTACCC GCAATGGCTG ACGCTCGCGG GCGCCGCTTC CGCGCCCGCG
CCGGCGGCGG ACTCCGTGGC CGCGGCGATC ATGGCGGTCA AGACGCAGTA TCGCGCGACG
CCGCATCACG GCATCGGCTA CGGCATCCTG CGTTACGTCG CGGGCGACCC CGAACTGGCC
GCGGAAGCCG CCGCGCACGC ACCGGAGATC GTCTTCAACT ATCTCGGGCA GTTCGACGTC
GCAAACGACG AGGCCGCCGG CATCGCGGTG CTCGACCTGT CCTCGCGCGA CGACATCGCG
GCGGCGCGGC CGCGCGAGCA CGCGCTCGGC ATCGACGGCG GGGTCAAGGA CGGCTGCCTC
GCGTTCGAGA TCGACTACTC GGGCGCCGCG TTCGACGATG AGTCGATCGC GGCGTTCGGC
GCGCATTTCA TGCATGCGCT GCGGGAGATC GCCGCGCATT GCAAGGCGTG CGCCGCGTGG
CGCCCGACGC CCGAGGATTT TCCGCTCGCC GCGGTGACGC AGGCCGAGCT CGACGCGTGG
CACGCGCGCC ATCCGTCGCT CGAAACGCTG TATCCGGCGA CCGCGATCCA GCGGGGCATG
GTGTTCCACA GCCTGCTGCC GAAGCAGGCG AGCGCCTATA CGAACCAGGT GCACGCGCGC
GTCGGCGGCG GCACGTTCGA CGCCGCGCGC CTGCGACACG CGTGGCAGAC GGTCCTCGAG
CGCCACGCGG CGCTGCGCAC CGCGTTCGTC GGCTTCGAGC GCGAGCAGCC GTTGCAGATC
GTGCTCGCGC ACGCCGCGTG CCCGTGGCGC GACATCGATC ACCGGCACCT CGCGCCCGAG
GCGCGCGATG CGGCGTTCGC GGCGCTGCTC GCGGCGGACA AGGCCGCGCC GTTCGATTTC
GGCCGCGCGC CGCTGATGCG CTTTCATCTG GTGCGCGACG ACGATGCGCA CTACCGCTTC
ATCTGGACCT ATCACCACGC GGTACTCGAC GGATGGAGCG TGCAGCTCGT CTGGTCCGAT
CTGCTGCGCG TCTACGAGGC ACTGGCGGCC GGCCGGCCCG CGGCGTTGCC GGCCGCCGTG
CAGTTCGACG CGGTGCTCGC GTGGCGGCAG CGGCACGCGA GCGATGCGGA CAAGCGCTAT
TGGCGTGAGC AGATCGGCGC GCGCACGCAA CGCACCGTGC TCGACATCGA GCAGGCCGGG
CTCGCGGCGG CTTCGCCCGC CGCGCCCGCC GTCGTCGAGC GCTCGCTCGA CGAGGCGGCG
AGCGAGCGCC TCGCGACGGC CGCGCGCGCG TGCCGGGTCA CGCTCGCGTC GGTGCTGCAG
GCGGCCTGGG CGCTGCTGCT CGCGCGCCAT AGCGGCGAGA CGGCGCCCGT GTTCGGCGTG
ACGAGCTCGG GGCGCGCGAT CGACGTGCCC GGCGTCGAGA CGATCGTCGG CCCGCTGATC
GCGACGGTGC CCGCGCGCGT CGACGTCGAC GCGGCGCTGC CGCTTGGGGA CTGGCTGCGC
GCGGTGCACG AGCGGCACGT CGAGCGGGAG GCGCACGCGC AGCTCGAGCT CGTCGACATC
CTGCGCGAGA GCGGCGTGCG CGGCGGGCAG CCGCTCTTCG ACAGCCTGCT CGTCGTCGAG
AACTATCCGC TCGCCGAACC CAGCGCGGCG CGCATTCTCG GTCTGCGCGA TTACGGCTAC
GCGGAGGACA CGCACTACGG GCTCACCGTA TCGGCGACGC CGGGGCCGCG TTTGCGCGTC
GAAATCAATT TTGATCGTTC GCGGTACCAC ATCGAGGATA TCGAAGCCAT GGCAGACAAC
CTGAAAGCAG TGCTGACCCG CGTGCCGGAC GACCTCGCGC GCCCCGCCGG CGACGTGCTC
GGCGGCGCCG ACGCCGCGCG CGCGCAAGCG GGCGCGGAAG GCGAGCCGCG GCTCAGCCGC
GTGTCGCGGC AGGGCGAGTT GCGGCTCGGC CGTCATCTGG TGCCGCATCT GGTCGAGGAT
CACGCGGCGG CCACGCCCGA GCGCCGCGCG CTCGTCTATA ACGAGCGCGC GTACAGCTAC
GGCGAGTTGA ACCGGGCCGC GAACCGGATC GCGAATCGGC TGATGCAGGC GTTTCCCGAT
CTCGGCACGG ACGCGCTCGT GGGCGTGCGC GTGTCGCGCA GCGACCGGCT GGTGCTGACG
GTCCTCGCGA TCTGGAAGAT CGGCGCGGCC TACATTCCGA TCGATCCCGT GCTGCCCGGG
CAGCGCATGC GCGAGATGCT CGAGCTGGCG GGCGCGAAGG CGCTCGTCGT CGATGCGGCG
GTGGCGGCCG CCGAGCCGGC CGTCGCCGGC GTGCCGCGCA TCGCGTTCGA CGATCTCGTG
CAGGACGATC CGCGCCTCGA GGACAATCCC GACGTGCATC TGTCGGGCAA CGATCTGAGC
TACGTGCTGT TCACGTCGGG ATCGACCGGC AAGCCGAAGG GCGCGATGAT CGAGCACATC
GGCATGCTGA ACAACATCGC GAACAAGGCG CTCGATCTCG AGATGGACGA AGACAGCCGG
GTCGCGCAGA ACGCGTCGAT GAGCTTCGAC GTGTCGGTCT GGCAGATGTT CATCGCGCTC
ACGAAGGGCG GCACGACGTT CGTCTACGAC GAGCGTGCCG TCAACGACAT CGCCGGGCTG
ATCCGCCGCA TGGCCGCCGA CGGCGTGACG ATTCTCGAGG TGGTGCCGAC CTATCTGATC
GCCGTCGTCG AATACCTGGA GGAACATCCC GAGTGCGTGC GCCCCGCGTC GCTCAGGTTC
CTGATCGTCA ACGGCGAGAC CGTCGACGCG ACGCTGATCC GGCGCTGGTT CGCGCTGTTC
CCCGCGACGA AGCTCATCAA CGCGTACGGC CCGACCGAGG CGTCCGACGA CATCACGCAT
CACATCATGT CGCCCGGCGA CGAGATCGTG AATCCGGTGC CGGTCGGCCG CGCGCTCGCC
AATTTCGATC TCTACGTCGT CGACGACGAA CTGCGCCCGG TGCCGATCGG CACGCGCGGC
GAGATCGTGG CCACCGGCGT CGGCATCGGG CGCGGCTACA TCGGCATGGC GGGCGCGACC
GCGCAGGCGT TCGTGAAGAG CCCGTTCCCC GACCGCTACA AGGGGCGCCT GTACCGCACG
GGCGACCTCG GCGAGATGCG CGAGGACGGC GTGCTGATGT TCCATGGCCG CAAGGATCGG
CAGGTGAAGA TTCGCGGGAT GCGCATCGAG CTCGACGAGG TGGAGGCGAG CCTGCGCGCG
ATCGCGGCGG TCCGCCAGGC GGTGGTGCTC GCGATTCGGC CCGAGAACCG CGAGGCGTTC
CTCTGCGCGT GCGTGGTGCC GCTCGACGGC GCGCGCGAGG AGATCGTCGA CGCGCTGAAG
GCGAAGCTGC CGCCGTACAT GGTGCCGTCC GTGTTCCGCT TCGAGCGGGA ACTGCCGCAA
TTGCCGAGCG GCAAGGTGGA CCGCAACCGG CTGCGCGAGC AGTGCCTGAA CGAAACGCCG
CGCGCGAGCG AGCACGCGCT CGCGCCGCGC TCGCCGCTCG AGCGGCGCCT GGCGGAGGTC
TTTGGCGAGG TGCTCGGCCA CGACGCGTTC GGCGTGCTCG ACGATTTCTT CGCGCTCGGC
GGCGACTCGT TCAAGGCGAT CCGCATCGCG GCCAAGTACG GTCCGCCGCT CGAGGTGACC
GATATCTACG ATCATCCGAC GATCGAGGCG CTTGCCGCAC ATCTCGAGCG CGCGCCCCGG
GCCGAGCGCT CGATCGTGCA GATGGCGGGC GATCCGGCGA CGGCGAAGGC CGCGCTCGTG
TGCATCGCGA ATGCGGCGGG CGGCCCGGTC AACTTCGTCG AGATGAGCCG GGCGATGGCG
GAGCAGGCGG GCGAGCTCGC GGTGTTCGCG GTGAAGCTGC CGCGCAACGC GGTGGACAGC
GACGCGGCGA TGCTCGCCGA GGTGACGCGC CTCGCGAACG CGGTGTGCGA CGATCTGCTC
GCCGCGAGCG GGCTGCCGAT CATCGTGTTC GCGCAATGCA ACGGCTCGGC GCTCGCGATC
GCCGTCGCGC GCGAACTGAC GAGGCGCTCG GCCGACCTGC GCGCGCTGTG CATGGGCGGC
GCGCTGATGC GCACGGCGAG CGGCAAGCGC GATGCGCGCA CCGACGACGA AATCCTCGGC
TTTCTCGGCG GCATCGGCTC GACGCTGCCG GGCCGCCCCG ACGAGCGCGC GTTCTTCCTG
CACGAGTTCC GCTACGACAG CTGGCTCGCC GACGTCTATT ACAACCACCT CGTCGACGAG
GCGAGCCGCG GCGCGCTCAC GCCGCTCGAC ATTCCGGTGT GGTGCCTCGT CGGCACCGAC
GATCCGCTCG TGTCGCAGTA CGAGACGCGC CACCGCGACT GGTTGCGCAT CGGGCGCAGC
GTGAAGCTCG CCGAGTTCGC GGGCATCGGC CATTACCTGC TGCGCGATTG CCCGCACGCG
CTCGCGCGCA CGCTCGGCCA AGCGTGGGAA GCCGTGTCCC GCCGGAGCGT CGAGGCATGA
|
|---|
| Protein sequence | MVCDVAWAGA PDAALDAFFA DARRGVRLAD GPLFVAALVA AGATGRGRLL LIGHHAVVDG
VSWRVIVADL RRTFAQWPAL RPDAPGPASD AYQAWARALV AAADSPALHA ERAHWLRVLR
APAPALRLDR AAGGDATRRA TRIGAVSLNA ADTRALLADT HRAYRTQTIE LLLAGLLLAF
RRWQGHDALR IALEGHGREA DALAHYGAER GLPDVGETVG WFTSYYPQWL TLAGAASAPA
PAADSVAAAI MAVKTQYRAT PHHGIGYGIL RYVAGDPELA AEAAAHAPEI VFNYLGQFDV
ANDEAAGIAV LDLSSRDDIA AARPREHALG IDGGVKDGCL AFEIDYSGAA FDDESIAAFG
AHFMHALREI AAHCKACAAW RPTPEDFPLA AVTQAELDAW HARHPSLETL YPATAIQRGM
VFHSLLPKQA SAYTNQVHAR VGGGTFDAAR LRHAWQTVLE RHAALRTAFV GFEREQPLQI
VLAHAACPWR DIDHRHLAPE ARDAAFAALL AADKAAPFDF GRAPLMRFHL VRDDDAHYRF
IWTYHHAVLD GWSVQLVWSD LLRVYEALAA GRPAALPAAV QFDAVLAWRQ RHASDADKRY
WREQIGARTQ RTVLDIEQAG LAAASPAAPA VVERSLDEAA SERLATAARA CRVTLASVLQ
AAWALLLARH SGETAPVFGV TSSGRAIDVP GVETIVGPLI ATVPARVDVD AALPLGDWLR
AVHERHVERE AHAQLELVDI LRESGVRGGQ PLFDSLLVVE NYPLAEPSAA RILGLRDYGY
AEDTHYGLTV SATPGPRLRV EINFDRSRYH IEDIEAMADN LKAVLTRVPD DLARPAGDVL
GGADAARAQA GAEGEPRLSR VSRQGELRLG RHLVPHLVED HAAATPERRA LVYNERAYSY
GELNRAANRI ANRLMQAFPD LGTDALVGVR VSRSDRLVLT VLAIWKIGAA YIPIDPVLPG
QRMREMLELA GAKALVVDAA VAAAEPAVAG VPRIAFDDLV QDDPRLEDNP DVHLSGNDLS
YVLFTSGSTG KPKGAMIEHI GMLNNIANKA LDLEMDEDSR VAQNASMSFD VSVWQMFIAL
TKGGTTFVYD ERAVNDIAGL IRRMAADGVT ILEVVPTYLI AVVEYLEEHP ECVRPASLRF
LIVNGETVDA TLIRRWFALF PATKLINAYG PTEASDDITH HIMSPGDEIV NPVPVGRALA
NFDLYVVDDE LRPVPIGTRG EIVATGVGIG RGYIGMAGAT AQAFVKSPFP DRYKGRLYRT
GDLGEMREDG VLMFHGRKDR QVKIRGMRIE LDEVEASLRA IAAVRQAVVL AIRPENREAF
LCACVVPLDG AREEIVDALK AKLPPYMVPS VFRFERELPQ LPSGKVDRNR LREQCLNETP
RASEHALAPR SPLERRLAEV FGEVLGHDAF GVLDDFFALG GDSFKAIRIA AKYGPPLEVT
DIYDHPTIEA LAAHLERAPR AERSIVQMAG DPATAKAALV CIANAAGGPV NFVEMSRAMA
EQAGELAVFA VKLPRNAVDS DAAMLAEVTR LANAVCDDLL AASGLPIIVF AQCNGSALAI
AVARELTRRS ADLRALCMGG ALMRTASGKR DARTDDEILG FLGGIGSTLP GRPDERAFFL
HEFRYDSWLA DVYYNHLVDE ASRGALTPLD IPVWCLVGTD DPLVSQYETR HRDWLRIGRS
VKLAEFAGIG HYLLRDCPHA LARTLGQAWE AVSRRSVEA
|
|---|
| |