Gene BMASAVP1_A0612 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBMASAVP1_A0612 
Symbol 
ID4680753 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia mallei SAVP1 
KingdomBacteria 
Replicon accessionNC_008785 
Strand
Start bp623359 
End bp624903 
Gene Length1545 bp 
Protein Length514 aa 
Translation table11 
GC content71% 
IMG OID639844887 
ProductRND efflux system outer membrane lipoprotein 
Protein accessionYP_991959 
Protein GI121601280 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones25 
Plasmid unclonability p-value0.904611 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAAGCGAA AACATGCTTT GACTGCACTC GCAGTCGCGC TGCTCGCCGC GGGCTGCACG 
CTCGCGCCGC GCTACGAGCG TCCGGCCGCG CCGGTGTCGG GCGCGTTCCC CGCCGACGGC
GTCTATGCCG CGCAGCCGGG CGCCGCGCCC GGCGCGCGCA GCGCGAACGG CCAGGCGGCC
GTCGATATCG GCTGGCGCGA GTTCTTCGTC GATCCGCGCC TGCAGCGGCT GATCGAGATC
GCGCTGAAGA ACAACCGCGA CCTGCGCGTG TCGGTGCTCA ACGTCGAGGC GTCGCGCGCG
CAGTATCAGA TCACGCGCGC GGGGCTCTTC CCGACGTTGA GCGGCACCGG CACGGGCACG
ATCCAGCGCA CGCCGGCCGG CGTGTCGATC ACCGGCCAGC CGCTCATCTC GCGGACCTAC
AACGTCGGCG TCTCCGCGTC GTGGGAGCTC GACCTGTTCG GCCGCGTGCA GAGCCTGAAG
GACCAGGCGC TCGCGCAATA CTTCGCCACC GCGCAGGCGC GCAAGGCCGC GGAGATCTCG
CTCGTCGCGA GCGTCGCCGA TCAGTACCTG ACGCTGCTGT CGACCGACGA TCTGCTGCAG
GTCACGCAGA ACACGCTGAA GTCGGCGCGC GCGTCCTACG ATCTGACGAA GCTGCAGTTC
GACAACGGCA CCGGCTCGGA GCTCGACCTG CGCCAGGCGC AGACGGTGGT CGAGACCGCG
CTCGCGAGCC AGCAGGCGCA GGCGCGCGCC CGCGCGCAGG CGCTCAACGC GCTCGTGCTG
CTGATCGGCG AGCCGCTGCC CGACGATCTG CCGGCCGACC TGCCACTCAA TGCGCAGAAC
CTGCTCACCG ACATTCCGGC CGGGCTGCCG TCCGATCTGC TCACGCGGCG GCCCGACATC
ATGCAAGCCG AGGAGACGCT GCGCGCGGCG AACGCGAACA TCGGCGCGGC GCGCGCGGCG
TTCTTCCCGA AGATCTCGCT CACCAGCGCG TTCGGCACCG CGAGCACGAC GCTCGGCGGC
CTGTTCAAGG CGGGCACGGC GGCGTGGTCG TTCGCGCCGA ACATCGCGCT GCCGATCTTC
GAGGGCGGGC AGAACATCGC GAACCTCGAT CTCGCGCACG TGCAGAAGCG CATCGAGATC
GCGAACTACG AGAAGGCGAT CCAGAGCGCG TTTCGCGAGG TGTCGGACGG GCTTGCCGCG
CGCGGCACGT ACGATCAGCA GATCGCGGCG CTCGAGCGCA ACGAGCACGC GCAGCAGCGC
CGCTACGATC TGTCGGACCT GCGCTACAGG AACGGCGTCG ACAGCTATCT GTCGGTGCTG
ACCGCGCAGA CGGACCTGTA TTCGGCGCAG CAGCAGTTGA TCAGCGCGCG GCTCGCGCGC
TGGACGAACC TCGTGGACCT GTATCGCGCG CTGGGCGGCG GGTGGCTCGA GCGCGCGGGC
GAGACGCCGC GCCCGGCGGA CGCGCCCGTC GATTACGGCA AGGCGGCGCC CGCGCCGGCG
GTGGCCGTGC CGGCTGCGTC GGCCAGCGCG CCGGCGGCGG GCTGA
 
Protein sequence
MKRKHALTAL AVALLAAGCT LAPRYERPAA PVSGAFPADG VYAAQPGAAP GARSANGQAA 
VDIGWREFFV DPRLQRLIEI ALKNNRDLRV SVLNVEASRA QYQITRAGLF PTLSGTGTGT
IQRTPAGVSI TGQPLISRTY NVGVSASWEL DLFGRVQSLK DQALAQYFAT AQARKAAEIS
LVASVADQYL TLLSTDDLLQ VTQNTLKSAR ASYDLTKLQF DNGTGSELDL RQAQTVVETA
LASQQAQARA RAQALNALVL LIGEPLPDDL PADLPLNAQN LLTDIPAGLP SDLLTRRPDI
MQAEETLRAA NANIGAARAA FFPKISLTSA FGTASTTLGG LFKAGTAAWS FAPNIALPIF
EGGQNIANLD LAHVQKRIEI ANYEKAIQSA FREVSDGLAA RGTYDQQIAA LERNEHAQQR
RYDLSDLRYR NGVDSYLSVL TAQTDLYSAQ QQLISARLAR WTNLVDLYRA LGGGWLERAG
ETPRPADAPV DYGKAAPAPA VAVPAASASA PAAG