Gene BMA1280 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBMA1280 
Symbol 
ID3089215 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBurkholderia mallei ATCC 23344 
KingdomBacteria 
Replicon accessionNC_006348 
Strand+ 
Start bp1333032 
End bp1333643 
Gene Length612 bp 
Protein Length203 aa 
Translation table11 
GC content71% 
IMG OID637561994 
Producthfq protein 
Protein accessionYP_102947 
Protein GI53723505 
COG category[R] General function prediction only 
COG ID[COG1923] Uncharacterized host factor I protein 
TIGRFAM ID[TIGR02383] RNA chaperone Hfq 


Plasmid Coverage information

Num covering plasmid clones8 
Plasmid unclonability p-value0.000558443 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCCAATC CTGCAGAATC CCATCCGCAA AACGACTTCA TCAATGCCGC GCGCAAGGAA 
CGCAAGCGCG TCGAAATTTA TCTCGTCAAC GGTATTCGAC TGACGGGTTG CATCGAGTCG 
TTCGACCAGT ATCTGGTGAT GCTGCGCACG CCCGTCGGCC TGCAAGGCAT CTATAAACGC 
GCCATCTCGA CGATCCAGCT CGACACGGGC GGCTCCCGTC CGGGCGGACG CGGCCCGCGC 
GCGGGCGGCG CCCACGGCGG CGGCGGACGC CCCGGCGGAC GCGAAGGCGG CGGTCATGGC 
CCGTACGGCT CGCACGGCGG CTCGCGCGAA CCCCGCGGCG ACGGCGGCGG CTATGGCGCT 
CGCGAATCGC GCGGCGACGG CGGTTATGGC TCCCGCGAAT CGCGCGGCGA CGGCGGCTAC 
GGTTCCCGCG AACCGCGTGG CGACGGCGGC TATGGCGCGC GCGAGCCGCG TGAACCGCGC 
GAGCCCCGCG AGTCTTACGG CGCGCCGCAA GAAGGCGCAT CGACGCCGTC CGGCACGCAG 
GAACGCAACG GCAACGGCCC GGTGATCGTC ACGCGCCGTC GCCGTTCGCT CGGCCCGACC 
GACGGCCAAT AA
 
Protein sequence
MANPAESHPQ NDFINAARKE RKRVEIYLVN GIRLTGCIES FDQYLVMLRT PVGLQGIYKR 
AISTIQLDTG GSRPGGRGPR AGGAHGGGGR PGGREGGGHG PYGSHGGSRE PRGDGGGYGA 
RESRGDGGYG SRESRGDGGY GSREPRGDGG YGAREPREPR EPRESYGAPQ EGASTPSGTQ 
ERNGNGPVIV TRRRRSLGPT DGQ