Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BMA10247_A0829 |
Symbol | oprC |
ID | 4890207 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia mallei NCTC 10247 |
Kingdom | Bacteria |
Replicon accession | NC_009079 |
Strand | + |
Start bp | 766197 |
End bp | 767729 |
Gene Length | 1533 bp |
Protein Length | 510 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 640147103 |
Product | outer membrane efflux protein OprC |
Protein accession | YP_001078028 |
Protein GI | 126447589 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACAAGA CCAACATCAA CGAACGCATC GCGCGCGTCG CGAAGATCGC GGCGGCGAGC GGGTTGCTCG TCGCGCTGCT CGCCGCGTGC GCGGTGGGGC CCGACTACCG GCGGCCCGAT GTCGCGACGC CCGCGGCGTT CAAGGAAGCG CCGGCGCTCG CGCCGGGCGA GCAGGCCGGC ACGTGGAAGG CGGCCGAGCC GGCCGACGCC GCGCATCGCG GCGAATGGTG GCGCGTATTC GGCGATCCGG TGCTCGATGC GCTCGAAACG CAGGCGCTTG CCGCGAACCA GAACCTGAAG GCCGCGGCGG CGCGCGTCGA GCAGGCGCGC GCGGCGACCC GCGCCGCGCG CTCGCAGTGG TTCCCGCAAG TGGGCGTGGG CTTCGGGCCG ACGCGCGAGG GGCTGTCGTC GGCGTCGCAG TTCCAGCCGC AGGGCAGCGG CCCGACGAAC GCGACGCTCT GGCGCGCGCA GGGCACGGTG TCGTACGAAG CGGACCTGTT CGGCCGCGTC GGCCGCAACG TCGAAGCGTC GCGCGCGGAC GAAGCGCAGA GCCAGGCGCT GTTCCGCTCG GTGCAGCTCG CGTTGCAGGC GGACGTCGCG CAGAACTACT TCGAGCTGCG CCGGCTCGAT TCCGACCAGG ATCTGTACCG GCGCACGGTC GGGCTGCGCG AGGAGGCGCT CAAGCTCGTG CAGCGGCGCT TTGCCGAAGG CGACATCAGC GAGCTCGACG TGTCGCGCGC GAAGAACGAA CTGGCGACCG CGCAGGCGGA CGCGGTGGGC GTCGCGCGGC GGCGCGCCGC ATCGGAGCAT GCGCTCGCGA TCCTGCTCGG CAAGGCGCCC GCGGATTTCT CGTTCAGCGA GACGCCGATC GCGCCGGTGG CGGTGCGCGT GCCGGCGGGG CTGCCGTCGG CATTGCTCGA GAGGCGGCCC GACATCGCGG CGGCCGAGCG CGCGATGATG GCCGCGAACG CGCGCATCGG CCTCGCGAAG TCCGCGTACT TCCCGAAGCT CGACATCACC GGCGCGTTCG GCTATGAGGC GGCGACGCTC GGCAACCTGT TCCTGTGGTC GAGCCGCACG TTCCTGCTCG GGCCGTTCGC GGGCACGGCG CTCACGCTGC CGATCTTCGA CGGCGGGCGC CGCAGCGCGG GCGTCGCGCA GGCGCGCGCG AAGTATGACG AGGAAGTCGC GAACTACCGG CAGCAGGTGC TCGTCGCGTT CCGCGAAGTG GAGGACAACC TTGCCGATCT GCGTCTGCTC GACGATCAGA TCCGCGCGCA AAGCGACGCC GTCAACGCGT CGCGGCGCGC GGCGAAGCTG TCGCGCACGC AGTATCAGGA AGGCGCGGTC AGCTATCTCG ACGTGATCGA CAGCGAGCGC TCGGTGCTCG AATCGCAACT GCAATCGAAC CAGTTGACGG GCACGCAGGC GGTATCGACG GTCAACCTGA TTCGCGCGCT CGGCGGCGGC TGGGGGAGCG ATGCGGCGCT CGGCTCGCGC GAGCCGGGCA AGCAGGACGT CGCGGCGCGT TGA
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Protein sequence | MNKTNINERI ARVAKIAAAS GLLVALLAAC AVGPDYRRPD VATPAAFKEA PALAPGEQAG TWKAAEPADA AHRGEWWRVF GDPVLDALET QALAANQNLK AAAARVEQAR AATRAARSQW FPQVGVGFGP TREGLSSASQ FQPQGSGPTN ATLWRAQGTV SYEADLFGRV GRNVEASRAD EAQSQALFRS VQLALQADVA QNYFELRRLD SDQDLYRRTV GLREEALKLV QRRFAEGDIS ELDVSRAKNE LATAQADAVG VARRRAASEH ALAILLGKAP ADFSFSETPI APVAVRVPAG LPSALLERRP DIAAAERAMM AANARIGLAK SAYFPKLDIT GAFGYEAATL GNLFLWSSRT FLLGPFAGTA LTLPIFDGGR RSAGVAQARA KYDEEVANYR QQVLVAFREV EDNLADLRLL DDQIRAQSDA VNASRRAAKL SRTQYQEGAV SYLDVIDSER SVLESQLQSN QLTGTQAVST VNLIRALGGG WGSDAALGSR EPGKQDVAAR
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