| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BMA10247_2942 |
|---|
| Symbol | rpoN |
|---|
| ID | 4891781 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Burkholderia mallei NCTC 10247 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009080 |
|---|
| Strand | - |
|---|
| Start bp | 2900037 |
|---|
| End bp | 2901545 |
|---|
| Gene Length | 1509 bp |
|---|
| Protein Length | 502 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640151590 |
|---|
| Product | RNA polymerase factor sigma-54 |
|---|
| Protein accession | YP_001082462 |
|---|
| Protein GI | 126450267 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
|---|
| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCCA GTCTTCAACT TCGCCTGTCG CAGCATCTCG CGCTCACGCC CCAGCTTCAG
CAGTCGATCC GGCTGTTGCA ACTGTCGACG CTCGAACTGC AACAGGAAGT CGCGACGGCG
ATCGCGCAGA ACCCGCTGCT CGAGAACGAC GATGACTGGA TCGCGAGCCC GTTGCGCGTC
GCGGCCGACG GCTCGGTGAT CGCGCAGACG CCCGCGTCGT CCGCGCCCGA GCCGATGGCG
GGCGCGCCGA ACGGCACGGC TGCGACCAAT GAGCGCACCG AGCGCGACGA AACCGCCGGC
GTCGACGAAT ACGACAGCTA TTCGGCCGAC GGCGGCGACG CGAGCCAGTG GAACCTCGAC
GACTTCGGCC GCTCGCCCGC CGCGTCCGAC GACGACGATC TGCCGCCGAT GCAGATCCAC
GAGACGTCGA CGTCGCTGCG CGATCATCTG ATGGCGCAGT TGCGCGTCAC GCAGGCGAGC
CCGCGCGATC GCGCGCTCGT CACGTTCCTG ATCGAATCGC TCGACGACGA CGGCTACCTG
AGCGCGTCGC TCGAGGAAGT GCTCGCCGAT CTGCCGGCGG AGCTCGAGGT CGACGTCGAC
GAACTGAACG CGGCGCTCGC GCTCGTGCAC AGCTTCGATC CGGCGGGCGT CGGCGCGCGC
TCCGCGTCCG AATGCCTGAA GCTGCAGTTG CTGCGCCTGG ATCCGTCCCC GACGCGCGCG
CTCGCGCTCG ATATCGTGTC GCAGCATCTG GAGCTGCTCG CCGCGCGCGA TTTCACGCGC
CTGCGCAAGC AACTGAAGGC GACCGACGAC GCGCTGCGCG ACGCGCACGC GCTGATCCGC
TCGCTCGAGC CGTTCCCCGG CGCGGCGTAC GGCAAGGCCG AAGCCGATTA CGTGGTGCCC
GACATCATCG TGAAGAAGGC CGGCCAAAAC TGGCAGGCGG AACTCAATCC GGAAGTGGTG
CCGAAGCTGC GGATCAACAA TCTTTACGCG AACATCCTGC GCAACAGCCG GGGCGATCCG
AGCGCGGGAT CGCTGAAGCA ACAGCTTCAG GAAGCGCGCT GGCTGATCAA GAACATTCAG
CAGCGGTTCG AGACGATCCT GCGCGTCGCG CAGGCGATTG TCGAGCGTCA GAAGAATTTC
TTCGCGCACG GCGAAATTGC GATGCGCCCC TTGGTTTTGC GGGAAATAGC TGATACGCTG
GGCCTACACG AGTCGACTGT CTCCCGTGTG ACAACCGGCA AGTACATGCT GACCCCGTTC
GGCACACTTG AATTTAAGTA CTTCTTCGGA TCGCACGTAT CGACAGACAC CGGAGGTGCC
GCGTCGTCGA CAGCGATCCG CGCCCTCATC AAACAACTGA TAGGAGCCGA AGACCCCAAA
TCCCCTCTTT CGGACAGTCG CATAGCCGAG CTGCTAGCGG AACAAGGGTT CGTGGTCGCG
CGCCGCACGG TTGCCAAATA TCGCGAAGCC CTCAAGATCC CGGCGGTGAA TCTGCGCAAG
TCTCTGTAG
|
|---|
| Protein sequence | MKASLQLRLS QHLALTPQLQ QSIRLLQLST LELQQEVATA IAQNPLLEND DDWIASPLRV
AADGSVIAQT PASSAPEPMA GAPNGTAATN ERTERDETAG VDEYDSYSAD GGDASQWNLD
DFGRSPAASD DDDLPPMQIH ETSTSLRDHL MAQLRVTQAS PRDRALVTFL IESLDDDGYL
SASLEEVLAD LPAELEVDVD ELNAALALVH SFDPAGVGAR SASECLKLQL LRLDPSPTRA
LALDIVSQHL ELLAARDFTR LRKQLKATDD ALRDAHALIR SLEPFPGAAY GKAEADYVVP
DIIVKKAGQN WQAELNPEVV PKLRINNLYA NILRNSRGDP SAGSLKQQLQ EARWLIKNIQ
QRFETILRVA QAIVERQKNF FAHGEIAMRP LVLREIADTL GLHESTVSRV TTGKYMLTPF
GTLEFKYFFG SHVSTDTGGA ASSTAIRALI KQLIGAEDPK SPLSDSRIAE LLAEQGFVVA
RRTVAKYREA LKIPAVNLRK SL
|
|---|
| |