Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BMA10247_2662 |
Symbol | gspD |
ID | 4894533 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia mallei NCTC 10247 |
Kingdom | Bacteria |
Replicon accession | NC_009080 |
Strand | + |
Start bp | 2626180 |
End bp | 2628453 |
Gene Length | 2274 bp |
Protein Length | 757 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640151313 |
Product | general secretion pathway protein D |
Protein accession | YP_001082187 |
Protein GI | 126450814 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1450] Type II secretory pathway, component PulD |
TIGRFAM ID | [TIGR02517] general secretion pathway protein D |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAGAA CTCGCTTTGC TTTGCGGCGC GTCGCAACGG CGCTCGTTGT CGCCGGAATT GTCGCCGCGC AGGCCGCTCA CGCTCAGGTC ACGCTCAATT TCGTCAATGC GGACATCGAT CAGGTCGCCA AGGCGATCGG CGCCGCGACG GGCAAGACGA TCATCGTCGA TCCTCGCGTC AAGGGGCAGC TGAACCTCGT CGCCGAGCGT CCGGTGCCCG AAGATCAGGC GCTGAAGACG CTGCAGTCCG CGCTGCGTAT GCAGGGCTTC GCGCTCGTCC AGGATCACGG CGTCCTGAAG GTCGTGCCGG AAGCCGACGC GAAGCTGCAG GGCGTGCCGA CCTACATCGG CAACGCGCCG CAGGTGCGCG GCGACCAGGT GGTCACGCAA GTGTTCGAGC TGCGCAACGA ATCGGCGAAC AACTTGCTTC CGGTGCTGCG CCCGCTGATC TCGCCGAACA ACACGATCAC CGCGTATCCG GCCAACAACA CGATCGTCGT CACCGATTAC GCGGACAACG TGCGCCGGAT CGCGCAGATC ATCGCGGGCG TCGACAGCGC GGCGGGCTCG CAAGTCGCCG TCGTGCCGCT CAAGAATGCG AATGCGATCG ACATCGCCGC GCAACTGACG AAGCTGCTCG ACCCGGGCGC GATCGGCAAC ACCGACGCGA CGCTGAAAGT CACCGTGCAG GCCGATCCGC GAACCAATGC GCTGCTGCTG CGCGCATCGA ACGCGCAGCG CCTCGCCGCG GCGAAGAAGA TCGCGCAGCA GCTCGACGCG CCGAGCGGTG TGCCGGGCAA CATGCACGTC GTGCCGCTGC GCAATGCGGA AGCGGTGAAG CTCGCGAAGA CGTTGCGCGG GATGCTCGGC AAGGGCGGCG GCGAAAGCGG CTCGTCGGCG AGCTCGAACG ACGCGAACGC GTTCAATCAG GGCGGCTCGC AAAGCGGCTC GAACTTCTCG ACGGGCGCAT CGGGCACGCC GCCGCTGCCG TCGGGGCTGT CGTCGAATTC ATCGGGCGGC GCGGGCGGCA CGACGGGCGG CGGCGGGCTC GGCAATGCGG GGCTGCTCGG CGGCGACAAG GACAAGGGCG ACGACAACCA GCCGGGCGGA ATGATCCAGG CGGACGCGGC GTCGAATTCG CTCATCATCA CCGCGTCGGA TCCGGTATAC CGGAATCTGC GGGCCGTGAT CGACCAGCTC GATTCGCGGC GCGCGCAGGT GTACATCGAG GCGCTGGTCG TCGAGCTGCA GGCGACGACG AGCGCCAATC TGGGCATTCA ATGGCAGGTT GCGAACAACG CGCTCTATGC GGGCACCAAT CTGGTGACGG GGCAGACCGG CCTCGGCAAC AGCATCGTCA ATCTGACGGC GGGAGCCGTG ACCAATCCGG GCGGCACGCT GGGGTCGCTG GGCTCGATCA CGAACGGCCT GAACATCGGT TGGTTGCACA ACATGTTCGG CGTGCAGGGT TTGGGCGCCT TGCTGCAGTT CTTCGCGGGC TCGAGCGACG CAAACGTGCT GTCGACGCCG AACCTCGTCA CGCTGGACAA TGAGGAGGCG AAGATCGTGG TCGGCCAGAA CGTGCCGATT CCGACGGGCT CGTACTCGAA CCTGACGAGC GGCACGACCG CCAACGCGTT CAACACATAC GACCGGCGCG ATGTCGGCCT GACGCTGCAC GTGAAGCCGC AAATCACCGA GGGCGGCATT CTGAAGCTGC AGCTGTACAC GGAAGATTCC GCGGTGGTGC CCGGCACGAA CACGACGTCG GCCAATTCGC CCGGGCCGAC GTTCACGAAG CGCTCGATCC AGTCGACGGT GCTGGCGGAC AACGGCGAGA TCATCGTGCT CGGCGGGTTG ATGCAGGATA ACTACCAGGT ATCGAATACG AAGGTGCCGC TCCTCGGCGA CATTCCGTGG ATCGGCCAGC TGTTCCGCTC CGAGGGCAAG ACGCGCCAGA AGACGAACCT GATGGTGTTC CTGCGCCCCG TGATCATCAA CGACCGCGAG ACCGCGCAGG CGGTGACCTC GAACCGCTAC GACTACATCC AGGGCGTGAC GGGCGCGTAC AAGTCGGACA ACAACGTCAT TCGCGACAAG GATGACCCGA TCGTCCCGCC GATGCCGCTC GGCCCGAGCC AGGGCGGCTC GCCCGCGATG AACCTGTTCG ACCTCGACAA GATGCGGCGC CAGCAGCTCG CTCCGCCCGC GCCCGCCAGC GCGCCGGCGG CGGCGAGCGA CGCCGGCACC GCGTCGCCGG GAGCCCGTCC GTGA
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Protein sequence | MTRTRFALRR VATALVVAGI VAAQAAHAQV TLNFVNADID QVAKAIGAAT GKTIIVDPRV KGQLNLVAER PVPEDQALKT LQSALRMQGF ALVQDHGVLK VVPEADAKLQ GVPTYIGNAP QVRGDQVVTQ VFELRNESAN NLLPVLRPLI SPNNTITAYP ANNTIVVTDY ADNVRRIAQI IAGVDSAAGS QVAVVPLKNA NAIDIAAQLT KLLDPGAIGN TDATLKVTVQ ADPRTNALLL RASNAQRLAA AKKIAQQLDA PSGVPGNMHV VPLRNAEAVK LAKTLRGMLG KGGGESGSSA SSNDANAFNQ GGSQSGSNFS TGASGTPPLP SGLSSNSSGG AGGTTGGGGL GNAGLLGGDK DKGDDNQPGG MIQADAASNS LIITASDPVY RNLRAVIDQL DSRRAQVYIE ALVVELQATT SANLGIQWQV ANNALYAGTN LVTGQTGLGN SIVNLTAGAV TNPGGTLGSL GSITNGLNIG WLHNMFGVQG LGALLQFFAG SSDANVLSTP NLVTLDNEEA KIVVGQNVPI PTGSYSNLTS GTTANAFNTY DRRDVGLTLH VKPQITEGGI LKLQLYTEDS AVVPGTNTTS ANSPGPTFTK RSIQSTVLAD NGEIIVLGGL MQDNYQVSNT KVPLLGDIPW IGQLFRSEGK TRQKTNLMVF LRPVIINDRE TAQAVTSNRY DYIQGVTGAY KSDNNVIRDK DDPIVPPMPL GPSQGGSPAM NLFDLDKMRR QQLAPPAPAS APAAASDAGT ASPGARP
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