Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BMA10229_0786 |
Symbol | pbpC |
ID | 4790297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Burkholderia mallei NCTC 10229 |
Kingdom | Bacteria |
Replicon accession | NC_008835 |
Strand | + |
Start bp | 827011 |
End bp | 830193 |
Gene Length | 3183 bp |
Protein Length | 1060 aa |
Translation table | 11 |
GC content | 74% |
IMG OID | |
Product | penicillin-binding protein 1C |
Protein accession | YP_001024601 |
Protein GI | 124382295 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.879691 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | TTGGCGTCGA CGCTCGCGCG GCGGGCCGCG CAGGCGGCCG TGCCGCGATG GGTTTGGCCG TTCGCCCGAC CGGCCGGGTG GTCGCTCGGT TCGGTGTTCG GTTCGGTGTT CGGTTCGGTG TTCGGTTCGG TGTTCGGTTC GGTGTTCGGT CCAGCGTTCG GTCCGGCGTT CGGTCCGGCG TTCGGTTCGG CGTTCGGTCC GGCGTTCGGT TCGGCGTTCG GTCCGGCGTT CGGTCCGGCG TTCGGTCCGG CGTTCGGTTC GGCGTTCGGT TCGGCGTTCG GTTCGGTGTT CGGTTCGGCG TTCGGTTCGG CGTTCGCGGC GTTCGGTCTC GCGCTCGCCC CCCTGCTCGC CGCGCCGCCC GTTCGGCCGC GCGCCCGGCG GAACCCGCGC CCGTGCGGCT CGCCGCGGCG CGCGGCGCTC CCGCGCGCGC GAACGACGGC GAGCCGCACG CTCGCCGTCG CGATGCTCGC CGCGCCGCTC GCCGCGCACG CGCTGCCGGC CTACGACGAC GTGCGGCGCG ACTGGCGCAG CACCGACTGG TTGCTGCTCG CACGCGACGG CACGCCGCTT CAGCGCACGC GCGTGGAGCT CACCGAGCGG CGCGGCGACT GGATCGCGCT CGCCGACGTA TCGCCCGCGT TTCGAGAGGC GATCGTCGTA TCGGAGGACA AGCGCTTCTA CGCGCACAGC GGCGTCGACT GGCGCGGCAT CGCGGGCGCC GCATGGGGCA ATCTGTGGAA CGAGCGCACG CGCGGCGCGT CGACGGTGAC GATGCAGCTC GCCGGCCTGC TGAGCGACAC GCCGCGCCGC TCGGGCCAGC GCTCGCTGCC GCAGAAGGCC GCGCAGGCGA TGAACGCGCT GCGGCTCGAA CGCGGCTGGC GCAAGGATCA GATCCTCGAG GCGTATCTGA ATCTCGTGCC GTTTCGCGGC GAGACGGTCG GGCTCGACGC GATGTCGCAC GCGCTGTTCG GCAAGGCGCC GTCGGGGCTC GACGTGCGCG AATCGGCGGT GGCCGCCGCG CTCGTGCGCG CGCCGAACGC GTCCGCCGCG AAAGTGGCCG AACGCGCGTG CCGGATCCTG CGCGACCTGC GCGCCGCGCA ACCGTGCGAA TCGCTCGACG GCTACGTGCG CTTCGTGACG TCCGCCCCGC CGGGCGCCGC GCGCGACGGC GGCGAAGCGC TCGCGCCGCA CTTCGCGCGG CGCGTCGCGG CCGAGGTGAA GCCCGGCGCG GGCGCGCGCG TGCGCTCCAC GCTCGACGCG CCGCTGCAGC GCTTCGCGCG CGACACGCTC ACGCGCGCGC TCGCCGAGCT CAACGCGCCC GCCCATCGGC GCCACGTGCA GGACGGCGCG GTCGTCGTGA TCGACAACGC GACGGGCGAG ATCCGCGCAT GGGTCGGCTC GTCGGGCGCG CTGTCGGCCG CGCGCGACGT CGACGCGGTG CTCGCGCCGC GCCAGGCCGG CTCGACGCTC AAGCCGTTCC TCTACGCGCA GGCGCTCGAC GAACGGCGCC TCACCGCCGC TTCGCTGCTC GACGACGCGC CGATCGATCT CGCCGCGGGC GGCGGCCTGT ACATCCCGCA GAACTACGAC AAGCACTTCA AGGGCTGGGT CAGCGTGCGC ACCGCGCTCG GCGGATCGCT GAACGTGCCG GCCGTGCGCA CGCTCGTGCT CGTCACGCCG CACCGCTTCG CGCGCACGCT CACCGCGCTC GGGCTGCCGC TCGCCGAAGA AGGCGATTAC TACGGTTTCA GCCTCGCGCT CGGCAGCGCC GACGTCACGC TGCTGTCGCT CGCGAACGCG TACCGCGCGC TCGCCAACGG CGGCGTCGCG CGGGCGACGC TCGACGTGCC GGGCGGAAGC GGAAGCCGGA ACGGAAACGG AAACGGAAAT GACGCCGTCA CGTCGGCCCC GTTCGCGCCG ACCGTTTCGA AATCAAAGGT TGGCGCGTCA GCGGTTTTCC CGCGGGCCGT CTCGACGAAG GCCGAGCCCG CGAAGCCAGT GCCCACGGCG GCCCTTTCCC CCACGAGCGC TTCGACATCG ACCGCCGGCA AGCCGGCGGC GCACGCCGCA GCGGGCACGC GCGTATTCAG CGAAGCCGCG GCGTACATCG TCACCGACAT CCTCGCCGAC AACAACGCGC GCGTGCGCAC GTTCGGCTTC GACAGCCCGC TCGCGACGCG CTTCTTCTCC GCCGTCAAGA CGGGCACGAG CAAGGACATG CGCGACAACT GGGCGCTCGG CTACACGTCG CGCTACACGG TGGGCGTGTG GGTGGGCAAC GCGGACGGCT CGCCGATGTG GGACGTATCG GGCGTCACGG GCGCGGCGCC CGTGTGGGCC GCGATCGTCG GCTATCTGCA CCGCGATCTC GCGAGCCGCG CGCCGCGCCC GCCCGCCCGC CGGCGTCGAG CAGCGCCGCG TCGCGTTCGA ACGCGACGTC GAGCCCGCGC GCCCCGAGTG GTTCATCGCC GGCACCGCGC TCGACACGGT GCGCCTCGCC GCGCCCGCGA CCGCCGCCGC GGGCGGCGCA GACCGGCCGC GCGCGCCGCT TTCGATCGGC GCGCCGACCG ACGGCACGAT CTTCGCGATC GATCCGGACA TCCCGCCGAA GCACCAGCGA ATCTGGTTCG AGCGCGCGGC GGGGCGCGCG GCGCGCTTCT CGTGGCGGCT CGACGGCAAG GTGATCGGCC GCGGCGAGCG CCTCGCGTGG ATGCCGTGGC CGGGATCGCA CCGGCTCGAG CTCGTCGACG CGCGCGGCAA CGTCGCCGAC GCGGTCGGCT TCGAGGTGCG CGGCGCGTTC GCGAAGACGG CGGCCCCACC GAAGCCGTGA GACGGCCCGC GCGCGCCGCC CAAGCGGCGC GCGCTCACAG CGCATCGAGA AACTGTTCGA GCGCCGCCTT CATCTTGTGG ATCGCCGCAT CCGGCAACAG CATCACCAGC TTCGCGACGA AGCCGCCGTG CTCGAGCGTG AAATGCACTT CGAGCAGCAG CGCGACGTCC CATCGGCCGA GGCGCTCGTC GCCGAGCGCC GACGCGAGCG AGCCCGGCGG CACGAATGTC GGGCGCAGGA ACGTGAGCCG CCGGTCGAGC TGCTCGAACA CGCTGTGCAC GCACGCGCCG ACGAGCAGGC TCGCGATGTC GGACAGCGCC TCGTCCTCGA TGTCGTCCGT CGCGTCGTCG TAG
|
Protein sequence | MASTLARRAA QAAVPRWVWP FARPAGWSLG SVFGSVFGSV FGSVFGSVFG PAFGPAFGPA FGSAFGPAFG SAFGPAFGPA FGPAFGSAFG SAFGSVFGSA FGSAFAAFGL ALAPLLAAPP VRPRARRNPR PCGSPRRAAL PRARTTASRT LAVAMLAAPL AAHALPAYDD VRRDWRSTDW LLLARDGTPL QRTRVELTER RGDWIALADV SPAFREAIVV SEDKRFYAHS GVDWRGIAGA AWGNLWNERT RGASTVTMQL AGLLSDTPRR SGQRSLPQKA AQAMNALRLE RGWRKDQILE AYLNLVPFRG ETVGLDAMSH ALFGKAPSGL DVRESAVAAA LVRAPNASAA KVAERACRIL RDLRAAQPCE SLDGYVRFVT SAPPGAARDG GEALAPHFAR RVAAEVKPGA GARVRSTLDA PLQRFARDTL TRALAELNAP AHRRHVQDGA VVVIDNATGE IRAWVGSSGA LSAARDVDAV LAPRQAGSTL KPFLYAQALD ERRLTAASLL DDAPIDLAAG GGLYIPQNYD KHFKGWVSVR TALGGSLNVP AVRTLVLVTP HRFARTLTAL GLPLAEEGDY YGFSLALGSA DVTLLSLANA YRALANGGVA RATLDVPGGS GSRNGNGNGN DAVTSAPFAP TVSKSKVGAS AVFPRAVSTK AEPAKPVPTA ALSPTSASTS TAGKPAAHAA AGTRVFSEAA AYIVTDILAD NNARVRTFGF DSPLATRFFS AVKTGTSKDM RDNWALGYTS RYTVGVWVGN ADGSPMWDVS GVTGAAPVWA AIVGYLHRDL ASRAPRPPAR RRRAAPRRVR TRRRARAPRV VHRRHRARHG APRRARDRRR GRRRPAARAA FDRRADRRHD LRDRSGHPAE APANLVRARG GARGALLVAA RRQGDRPRRA PRVDAVAGIA PARARRRARQ RRRRGRLRGA RRVREDGGPT EAVRRPARAA QAARAHSASR NCSSAAFILW IAASGNSITS FATKPPCSSV KCTSSSSATS HRPRRSSPSA DASEPGGTNV GRRNVSRRSS CSNTLCTHAP TSRLAMSDSA SSSMSSVASS
|
| |