Gene BMA0536 details

Gene Information

• Locus tag: BMA0536
• Symbol: algU
• ID: 3089453
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Burkholderia mallei ATCC 23344
• Kingdom: Bacteria
• Replicon accession: NC_006348
• Strand: +
• Start bp: 561655
• End bp: 562254
• Gene Length: 600 bp
• Protein Length: 199 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637561368
• Product: RNA polymerase sigma factor RpoE
• Protein accession: YP_102332
• Protein GI: 53725364
• COG category: [K] Transcription
• COG ID: [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
• TIGRFAM ID: [TIGR02937] RNA polymerase sigma factor, sigma-70 family; [TIGR02939] RNA polymerase sigma factor RpoE

Plasmid Coverage information

• Num covering plasmid clones: 19
• Plasmid unclonability p-value: 0.543409
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAGTGAAA AAGAAATCGA TCAGGTACTG GTCGAACGCG TACAGAATGG CGACAAGGCG 
GCGTTCGAAC TCCTGGTCTC CAAATACCAC CGCAAGATCA TCCGGCTGAT CTCGCGCCTC 
GTGCGGGATC CCGCGGAGGT CGAGGACGTG GCCCAGGACG CGTTCATCAA GGCGTATCGC 
GCGTTGCCGC AGTTTCGCGG CGAGTCGGCG TTCTACACGT GGTTGTACCG GATTGCCGTC 
AATACGGCGA AGAACTACCT TGCGACCCAG GGGCGCCGGG CGCCCACGTC CACCGACGCG 
GACGCCGAAG AGGCTGAAAC TTTCTCCGAC GCGGACCAAC TAAGGGATAT CAACACGCCT 
GAGTCGATGT TGATGAGCAA GCAGATCGCC CAAACGGTCA ACGCCGCGAT GGCGCTGTTG 
CCGGAAGAGT TGCGAACGGC CATCACGCTG CGCGAGATCG AAGGTCTGAG CTACGAAGAG 
ATCGCGGAGA TGATGGGTTG CCCGATCGGC ACCGTCCGCT CGCGGATCTT TCGCGCCCGC 
GAGGCGATCG CGGCAAAATT GCGGCCGCTG CTCGATACGC CGGAAGGCAG GCGCTGGTAA 

 

Protein sequence

MSEKEIDQVL VERVQNGDKA AFELLVSKYH RKIIRLISRL VRDPAEVEDV AQDAFIKAYR 
ALPQFRGESA FYTWLYRIAV NTAKNYLATQ GRRAPTSTDA DAEEAETFSD ADQLRDINTP 
ESMLMSKQIA QTVNAAMALL PEELRTAITL REIEGLSYEE IAEMMGCPIG TVRSRIFRAR 
EAIAAKLRPL LDTPEGRRW