| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_1855 |
|---|
| Symbol | uup3 |
|---|
| ID | 6363464 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bifidobacterium longum DJO10A |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_010816 |
|---|
| Strand | - |
|---|
| Start bp | 2208909 |
|---|
| End bp | 2210588 |
|---|
| Gene Length | 1680 bp |
|---|
| Protein Length | 559 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 642681061 |
|---|
| Product | putative ABC transporter ATP-binding protein |
|---|
| Protein accession | YP_001955798 |
|---|
| Protein GI | 189440717 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG0488] ATPase components of ABC transporters with duplicated ATPase domains |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAT TCGTATTTCA GATGATCAAG GCCCGCAAGT CTTACGGCGA CCGCGTGATT
CTCGATGACG TGACCCTGAG CTTCCTGCCC GGCGCAAAGA TCGGCGTCGT GGGCCCGAAC
GGCATGGGTA AGTCCACCCT GCTCAAGATC ATGGCCGGCC TGGAGACCGT GAGCAACGGC
GAGGCCGCCC TGACCCCGGG CTTCACGGTC GGCATCCTGC AGCAGGAGCC GCCGCTGGAC
GACACCAAGA CCGTGGGCGA GAACATCAAG ATGGCGTTCG GCCCGATTGC CGAGAAGGTC
GCCCGATTCA ACGAAATCGG TGAAGAAATG GCCAACCCGG ACGCCGACTT CGACGCCCTG
ATGGAAGAGA TGGGCAAGCT GCAGACCGAG ATCGACGCCG CCGACGGTTG GGACCTCGAC
TCCCAGCTCG AGCAGGCGAT GGACGCCCTG CAGTGCCCGG ACCCGGACAC CCCGGTCAAC
GTGTGCTCCG GTGGCGAGCG CCGCCGTGTG GCCCTGTGCA AGCTGCTGCT TGAGGCCCCG
GACCTGCTGC TGCTCGACGA GCCCACCAAC CACCTGGACG CCGAGTCCAT CCTGTGGCTG
GAACAGTTCC TGCACCAGTA CAAGGGCGCT GTCATCGCCG TCACCCACGA TCGTTACTTC
ATGGACAATG TGGCCGAATG GATTTGCGAG GTCGACCGCG GCCACCTGTA CCCGTACAAG
GGCAACTACT CCACCTACTT GGAGACCAAG GCCAAGCGTC TGGAGATCCA GGGAGCCAAG
GACGCCAAGC TCGCCAAGCG ACTGAAGAAC GAGCTCGACT GGGTGCGCTC CTCCCCCAAG
GCCCGCCAGG CCAAGAACAA GGCCCGTCTG GAGCGTTACG ACCAGATGGA AAACGAGGCA
CGCAACAACA AGAAGCTCGA CTTCTCCGAG ATTCAGATTC CGGCCGGCCC GCGCCTGGGT
TCCACCGTGC TGGAAGCCAA CCATATCCAC AAGGCCTTCG GCGAGCGTGT GCTCATCGAC
GACCTGTCCT TCACGCTGCC GCGCAACGGC ATCGTCGGCG TAATCGGCCC GAACGGCGTG
GGTAAGTCCA CGCTGTTCAA GACCATCGTG GGCCTGGAGC CGCTGACCAG CGGCGAGCTG
AAGATCGGCG ACACCGTCAA AATCAGCTAC GTGGACCAGA ACCGTGAGGG CCTGGACCCC
AACAAGAACC TGTGGGAAGC CGTGTCCGAC GGCCTCGACT TCATCGAGGT GGCCGGTGTG
GAGGTGCCGA CCCGCGCCTA TGTGGCCAGC TTCGGCTTCA AGGGCGCCGA TCAGCAGAAG
CTGACCGGTG TGCTGTCCGG TGGTGAGCGC AACCGTCTGA ACCTGGCCCT GACCCTGAAG
CAGGGCGGCA ACCTGCTGCT TCTCGACGAG CCCACCAACG ATTTGGACGT CGAGACTTTG
GAATCCCTCG AAAACGCACT GCTCGAATTC CCGGGCTGCG CCGTGGTGAT CTCCCACGAC
CGTTGGTTCC TCGACCGCGT CGCCACGCAT ATCCTCGCGT GGGAAGGCGA CGACGACAAC
CCGGCCAAGT GGTACTGGTT CGAAGGCAAC TTCCAGGCCT ACCAGGAGAA CAAGGTGGCC
CGACTCGGTG AGGATGCGGC CCGCCCGCAC CGCCTGCACA AGAAGCTCGT GCGCGGCTGA
|
|---|
| Protein sequence | MAEFVFQMIK ARKSYGDRVI LDDVTLSFLP GAKIGVVGPN GMGKSTLLKI MAGLETVSNG
EAALTPGFTV GILQQEPPLD DTKTVGENIK MAFGPIAEKV ARFNEIGEEM ANPDADFDAL
MEEMGKLQTE IDAADGWDLD SQLEQAMDAL QCPDPDTPVN VCSGGERRRV ALCKLLLEAP
DLLLLDEPTN HLDAESILWL EQFLHQYKGA VIAVTHDRYF MDNVAEWICE VDRGHLYPYK
GNYSTYLETK AKRLEIQGAK DAKLAKRLKN ELDWVRSSPK ARQAKNKARL ERYDQMENEA
RNNKKLDFSE IQIPAGPRLG STVLEANHIH KAFGERVLID DLSFTLPRNG IVGVIGPNGV
GKSTLFKTIV GLEPLTSGEL KIGDTVKISY VDQNREGLDP NKNLWEAVSD GLDFIEVAGV
EVPTRAYVAS FGFKGADQQK LTGVLSGGER NRLNLALTLK QGGNLLLLDE PTNDLDVETL
ESLENALLEF PGCAVVISHD RWFLDRVATH ILAWEGDDDN PAKWYWFEGN FQAYQENKVA
RLGEDAARPH RLHKKLVRG
|
|---|
| |