Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BLD_0964 |
Symbol | rpoC |
ID | 6363193 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bifidobacterium longum DJO10A |
Kingdom | Bacteria |
Replicon accession | NC_010816 |
Strand | - |
Start bp | 1123576 |
End bp | 1127613 |
Gene Length | 4038 bp |
Protein Length | 1345 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 642680132 |
Product | DNA-directed RNA polymerase subunit beta' |
Protein accession | YP_001954908 |
Protein GI | 189439827 |
COG category | [K] Transcription |
COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTGGACG TCAACGCATT TGACAAGATT CGCATCGGCC TTGCCACCGC CGATGACATC CGTGGTTGGA GCCACGGTGA GGTCAAGAAG CCTGAAACCA TCAACTACCG TACGCTGAAG CCTGAGAAGG ACGGTCTGTT CGGCGAACAG ATCTTCGGCC CGACCCGTGA CTGGGAGTGC GCCTGCGGCA AGTACAAGCG CGTGCGCTTC AAGGGCATCG TCTGCGAGCG ATGCGGCGTC GAAGTGACCC GCAGCCGCGT GCGCCGTGAG CGCATGGGCC ACATCGAGCT CGCCGCCCCG GTGACGCACA TCTGGTTCTT CAAGGGTGTG CCTTCCCGCC TCGGCTACCT GCTGAACGTC ACCCCGAAGG ACCTGGAGCG CGTGATTTAC TTCGCCTCCT ACATGGTCAC CGAGGTGAAC GAAGACGAGC GTCACAACGA TCTGCCCGGC CTGCAGGACG AGTTCGATTC CGAGATCAAG CGCCTTGAGC AGCGCCGTGA CTCCGACATC GAAGCCCGCG CCAAGAAGGT CGAAGAGGAT CTCGCCGCCC TTGAGGAGGC CGGCGAGGCC AAGGGCCCGG CCCGCACCAA GTTGCGTAAC GGTGCCGAGC GTGATATGGC TGCCATCCGC ACCCGCTACA ACGACCAGAT CGCCCGTGTG GACGCCGTCT TCGACAAGTT CAAGAAGCTC AAGCCCGGCG ACATGGTCGA CGACGTGGAC CTGTGGCGCG AGATGCAGGA CCGCTACGGC GATTACTTCG ACGGCTGCAT GGGCGCCGAA GCCATCAAGA AGCGCCTGCA GTCCCTCGAC CTGGAGACCA TCTCCAAGGA ACTGCGCGAG GAGATCAAGG ACGCTTCCGA ACAGCGTAAG ACCAAGGCCC TGAAGCGCCT CAAGGTCGTC AACGCCTTCC TGACCACCGG CAACAAGCCG GAGGCCATGG TGCTCGACGT GATCCCGGTC ATCCCGCCGG ACCTGCGCCC GATGGTCCAG CTCGACGGTG GCCGCTTCGC CACCTCCGAC CTCAACGACC TGTACCGCCG TGTGATCAAC CGTAACAACC GTCTGAAGCG ACTGATCGAG CTCGGCGCCC CTGAAATCAT GCTCAACAAC GAGAAGCGCA TGCTCCAGGA AGCCGTCGAC TCCCTGTTCG ACAACGGCCG TCGTGGTCGC CCGGTCACCG GTGCCTCCAA CCGTCCGCTG AAGTCCCTGT CCGACATGCT CAAGGGTAAG CAGGGTCGTT TCCGTCAGAA CCTGCTCGGT AAGCGAGTCG ACTACTCCGG CCGTTCCGTG ATCGTGGTCG GCCCGTCCCT GCGCATGCAC CAGTGCGGTC TGCCGAAGCC GATGGCCCTC GAGCTGTTCA AGCCGTTCGT CATCAAGCGC CTCGTGGACC TGAACTATGC GCAGAACATG AAGTCCGCCA AGCGTCTTGT GGACCGCGGC GACGCCGAAG TGTGGGGCGT GCTCGAGGAG GTCATCTCCG AGCACCCCGT GCTGCTCAAC CGTGCACCTA CGCTGCACCG TCTGGGTATT CAGGCATTCG AGCCGATCCT GGTGGAAGGC AAGGCCATCC ACCTGCCGCC GCTGGCCTGC GCCGCCTTCA ACGCCGACTT CGATGGTGAC CAGATGGCAG TCCACCTGCC GCTCTCCGCC GAAGCCCAGG CCGAGGCCCG CTCGCTGATG ATGGCTTCCG ACAACATCCT GAAGCCGGCC GACGGCCACA CCGTGACCAT GCCGAGCCAG GATATGATCC TCGGTTTGTA CTACCTGTCC ACCGTGCTGG AAGGCGTCAA GGGCCAGGGC CGCGTGTTCT CCTCGCTGGA AGAGGCCGAA ATGGCCCTCG ACCGCCACGA GATCGACATG CAGGCCAAGG TGCTCATCCG CCTGCCCGAG AGCTTCGTGC TGCCGAAGAA CTGGGAGCCC GGCGAAGTCA AGGTGCTCGA CCCGCGCGAA GGCGAGGACG AGGTCGTCAA GGAAGAACGC TTCCACGACG GCACCGTGCT GTTCGCCACC TCCTACGGCC GCATCCTGTT CAACGAGACC CTGCCGACCG ACTACCCGTT CGTCAACGAG CAGGTGGCCA AGGGCCGTCT GTCCAAGATC GTCGATGACA TCGCCATGCG TTACTCCACC CAGCAGGTGG CCGCCACGCT GGATGCCCTG AAGGATCTCG GCTTCACCCG CGCACCGTGG TCCGGCGTGT CCTTCGCGTT CTCCGACGTG AACGAGCCGC CCGAGCGCGA CGAGAAGATC GCCGAGTACG AGGCCAAGGC CGACAAGGTC AACGCCAACT ACGAGATGGG TCTGCTGACC GAGGAAGCTC GTCGTCAGGA ACTCATCGAC CTGTGGACCG AGTGCACCGC CGAGGTGTCC AAGGAAGTCG AGGAGAAGTT CGACCCGACC TCCAACCTGG CCATCATCGT GCAGTCTGGT GCACGAGGCA ACATGATGCA GATCAACCAG ATCGCAGGTA TGCGAGGCCT CGTGGCCAAC CCGAAGGGTG AGATCATTCC TCGTCCTGTG AAGTCCAACT ACCGCGACGG CCTGTCCGTG CTGGAGTACT TCATCTCCCA GCACGGTGCA CGTAAGGGTC TGGCCGATAC CGCACTGCGT ACCGCAGAAT CCGGTTACCT GACCCGTCGT CTGGTCGACG TCTCCCAGGA CGTCATCGTG CGCGAAGAGG ACTGCGGCAC CAAGGCCGGT CTGCCCATCC GCGTCGCCGA GCGCGACAAC GACGGCAACC TGGTGCTCGT CAAGGCCGCC GACGGTGGCC CGTACTCCCG TCTGCTCGCC GCCGACGTCA TCGACCCGGC CGACGGACAG ACCGTGCTGT ACAAGCGCGA CGACGCCCTG TCCATGGACG TGCTCAACGA CCTCGTGGCC CACGGCGTCG AGGAAGTCAA GTGCCGTTCC GTTCTGACCT GCGAGTCCAA GCGCGGCGTG TGCGCCAAGT GCTACGGCTG GTCCCTGGCC ACCAACAAGC TGGTCGATGT CGGCGAGACC GTCGGTATCG TCGCCGCCCA GTCCATCGGT GAGCCTGGTA CCCAGCTGAC GCTGCGTTCC TTCCACTCCG GTGGTGTGGC CGCGGCCTCC GATATCACCC AGGGTCTTCC CCGTGTCACC GAGCTTTTCG AGGCCCGCAC CCCGAAGGGT GAGGCCCCGA TCACCGAGTT CGCCGGCAGC ATCAAGATCG TGGAGAACGA TCGCGGTCGC CAGATCATCC TGACCCCGGA CGCCGATTCC GGCGCACCGA AGGAAGACGG CGTGATCAAG CCGATCACCT ACCAGGTCTC CAAGCGCGTG CCGCTCAAGG TTGCCGACGG CGACCACATC AAGGTCGGCA CCCAGCTGGT CGAAGGTTCT GTGGACCCCA AGAAGATCCT CACCATCCTC GGCAAGCGCG CCGCCCAGGT CAACATCGTG GAGGAAGTGC ACACCGTGTA CCGCTCCCAG GGTGTGGATA TCCACGACAA GCACATCGAG GTCATCGTGC ACCAGATGAC CCGTCGCGTG ACCATCATCG ACTCCGGCGA CACCGACCTG CTGCCGGGTG AGCTGGTGGA CAACGCCCGC TTCCGCGAGA TCAACCGCAA CATCGTCAAG AACGGTGGCC GTCCGGCCGT CGGTCGTCCG GCGCTTATGG GTATCACCAA GGCGTCGCTG GCCACCGACT CCTGGCTGTC CGCCGCATCC TTCCAGGAGA CCACCCGCGT GCTCACCGAA GCCGCCCTCT CCGAGAAGGT CGACGACCTC AAGGGCCTCA AGGAGAACGT CATCATCGGT AAGCTCATCC CGGCCGGTAC GGGCCTCGCA CGCTACCGCA ACGCCGTGGT CGAGCCCGAC AAGGCCATCC GCGACACCAT CTACCCGAAC TTCGGTCTGG GCGGCGATGG CGATCTCGGC GACGCGAGCT TCTCCGACGC CGACCTGTCT GACCTGAACT TCTCGAACCT CGAGTTCGGC GATCTGAAGC TCGGCGACGA CTTCAACCCG GATGATTTCT ACTCCGATCA GGGCGGTCAG CCTGACATCG AGGAGTAA
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Protein sequence | MLDVNAFDKI RIGLATADDI RGWSHGEVKK PETINYRTLK PEKDGLFGEQ IFGPTRDWEC ACGKYKRVRF KGIVCERCGV EVTRSRVRRE RMGHIELAAP VTHIWFFKGV PSRLGYLLNV TPKDLERVIY FASYMVTEVN EDERHNDLPG LQDEFDSEIK RLEQRRDSDI EARAKKVEED LAALEEAGEA KGPARTKLRN GAERDMAAIR TRYNDQIARV DAVFDKFKKL KPGDMVDDVD LWREMQDRYG DYFDGCMGAE AIKKRLQSLD LETISKELRE EIKDASEQRK TKALKRLKVV NAFLTTGNKP EAMVLDVIPV IPPDLRPMVQ LDGGRFATSD LNDLYRRVIN RNNRLKRLIE LGAPEIMLNN EKRMLQEAVD SLFDNGRRGR PVTGASNRPL KSLSDMLKGK QGRFRQNLLG KRVDYSGRSV IVVGPSLRMH QCGLPKPMAL ELFKPFVIKR LVDLNYAQNM KSAKRLVDRG DAEVWGVLEE VISEHPVLLN RAPTLHRLGI QAFEPILVEG KAIHLPPLAC AAFNADFDGD QMAVHLPLSA EAQAEARSLM MASDNILKPA DGHTVTMPSQ DMILGLYYLS TVLEGVKGQG RVFSSLEEAE MALDRHEIDM QAKVLIRLPE SFVLPKNWEP GEVKVLDPRE GEDEVVKEER FHDGTVLFAT SYGRILFNET LPTDYPFVNE QVAKGRLSKI VDDIAMRYST QQVAATLDAL KDLGFTRAPW SGVSFAFSDV NEPPERDEKI AEYEAKADKV NANYEMGLLT EEARRQELID LWTECTAEVS KEVEEKFDPT SNLAIIVQSG ARGNMMQINQ IAGMRGLVAN PKGEIIPRPV KSNYRDGLSV LEYFISQHGA RKGLADTALR TAESGYLTRR LVDVSQDVIV REEDCGTKAG LPIRVAERDN DGNLVLVKAA DGGPYSRLLA ADVIDPADGQ TVLYKRDDAL SMDVLNDLVA HGVEEVKCRS VLTCESKRGV CAKCYGWSLA TNKLVDVGET VGIVAAQSIG EPGTQLTLRS FHSGGVAAAS DITQGLPRVT ELFEARTPKG EAPITEFAGS IKIVENDRGR QIILTPDADS GAPKEDGVIK PITYQVSKRV PLKVADGDHI KVGTQLVEGS VDPKKILTIL GKRAAQVNIV EEVHTVYRSQ GVDIHDKHIE VIVHQMTRRV TIIDSGDTDL LPGELVDNAR FREINRNIVK NGGRPAVGRP ALMGITKASL ATDSWLSAAS FQETTRVLTE AALSEKVDDL KGLKENVIIG KLIPAGTGLA RYRNAVVEPD KAIRDTIYPN FGLGGDGDLG DASFSDADLS DLNFSNLEFG DLKLGDDFNP DDFYSDQGGQ PDIEE
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