Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BLD_0875 |
Symbol | hisJ4 |
ID | 6362847 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bifidobacterium longum DJO10A |
Kingdom | Bacteria |
Replicon accession | NC_010816 |
Strand | + |
Start bp | 1003120 |
End bp | 1003983 |
Gene Length | 864 bp |
Protein Length | 287 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642680042 |
Product | amino acid ABC transporter/signal transduction systems periplasmic protein |
Protein accession | YP_001954819 |
Protein GI | 189439738 |
COG category | [E] Amino acid transport and metabolism [T] Signal transduction mechanisms |
COG ID | [COG0834] ABC-type amino acid transport/signal transduction systems, periplasmic component/domain |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.00496425 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGTTCAATA AGCGACACAT CGTCCGTACC ATTGCGGCCA CCGTCAGCAT CCTGGCTCTG TCGTTCACCG CAGCCTGCGG TTCCGGCCAG TCCACCGCAT CCAATTCCAC CGATTCGGAC GACATCACCC AGCAGACGTA CAAGCCGGGC AAGCTGACCA TCGCCACCGG ACAGCCGGCC TACGAGCCGT GGGTTATGAA CGACAAGCCG GAAAGCGGTG AGGGCTACGA GGCGGCCGTC GCCTACGCAG TGGCCGACAA GCTCGGTTTC AAGAAGAGCG ACGTGGTGTG GACCCGCACC GCATTCGACA CCGCCATCGC TCCCGGCGCC AAGGACTGGG ATTTCAACAT CCAGCAGTTC GGCATCACCG ACGAGCGCAA GAAGGCCGTT GACTTCTCGT CCAGCTACTA CAACGACAGC CAGTCCGTCG TGGTCAAGAA AGACAGCAAG TTCGCCAACG CCACCAAGGT ATCCGATCTG AAGGATGCGA CCGTGGGCGT CATGGTCGGC ACCCTTGCCT ACGACTACGC CAAGGCGAAC ATCAAGGACG ACATCCAGAC GTTCAATGAT GATGCCGCAC TGGCTCAGGC ACTTGACGCC GGTCAGATCG ACGCACTGGT CACCAGCACC GTGGAATGCG TGTACATGGT GCAGTCCGAG CAGGTCAAGG ACTCCAAGGT GCTCGGCCGT CTGCCTGACT CCGAAGACAA GAGCGGCATG GGCATCGTGC TGCCGAAGGA TTCCAAGCTG ACTGCAGCCG TGACCAAGGC AGTGGATGAC CTGAACGCCG ACGGCACCAT CAAGAAGCTT CAGGACAAGT GGCTGGCCGA GTACACCACC GACCTGACCG AACTGAAGAA GTAA
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Protein sequence | MFNKRHIVRT IAATVSILAL SFTAACGSGQ STASNSTDSD DITQQTYKPG KLTIATGQPA YEPWVMNDKP ESGEGYEAAV AYAVADKLGF KKSDVVWTRT AFDTAIAPGA KDWDFNIQQF GITDERKKAV DFSSSYYNDS QSVVVKKDSK FANATKVSDL KDATVGVMVG TLAYDYAKAN IKDDIQTFND DAALAQALDA GQIDALVTST VECVYMVQSE QVKDSKVLGR LPDSEDKSGM GIVLPKDSKL TAAVTKAVDD LNADGTIKKL QDKWLAEYTT DLTELKK
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