Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BLD_0777 |
Symbol | mfd |
ID | 6362674 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bifidobacterium longum DJO10A |
Kingdom | Bacteria |
Replicon accession | NC_010816 |
Strand | - |
Start bp | 890921 |
End bp | 894505 |
Gene Length | 3585 bp |
Protein Length | 1194 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642679943 |
Product | transcription-repair coupling factor (superfamily II helicase) |
Protein accession | YP_001954721 |
Protein GI | 189439640 |
COG category | [K] Transcription [L] Replication, recombination and repair |
COG ID | [COG1197] Transcription-repair coupling factor (superfamily II helicase) |
TIGRFAM ID | [TIGR00580] transcription-repair coupling factor (mfd) |
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Plasmid Coverage information |
Num covering plasmid clones | 2 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGCCGGTG AGGCGACGCA CCCGGACCTG ATCAACGGCT CACTGGTAGG CATCCTGTCT GAGCTGGAAC AGGACAAGAC CTTCCTGAAG CTCGCCGCCG GCGACATCGA GGCTTCGGAC GACGTCGACA ACTCCGTCCT GGCCGGCATC CCCGAAGGTT TGCGCCCGGC TTTGGCCGCC GCCATCGGGC AGGGTGTGGC CGGCAAACCC GGCAAGCCGG TCGTGCTGGT CGTGGCCTCC GGCCGCGAAG CCGAAGAGAC CGTGGGCTCG CTGCGCTCCT GGTATGATGG CGACCCGAAC GACATCGCCC AGCTCGAAGC CTGGGAAACC CTGCCGCACG AGCGTCTGAG CCCGCGCGCG GACACCGTGG CCAGCCGCAT GGCCGTGTTC CGCAGACTCA AGCATCCGAG CGATACCGAT TCGATGTTCG GCCCGATTCG CATTCTCGTC ATGCCGATCC GCTCGCTCAT CCAGCCAGTC GTCCAAGGAC TGGGCGATGT CGAGCCGCTC GTGTTCACCG TGGGGGAGGA CCTGCCCCTC GACGAAGCCG CCAAACGTCT GATCGAAAAC GCCTATACGC GCGTGGACCT GGTCATGGAC CGTGGCGAGT TCGCGGTGCG CGGAGGCATT CTTGACGTAT TCCCGCCCAC CGCACCGCAC CCGGTGCGTA TCGAATTCTT CGGCGACGAA ATTGACACCA TCAAGGAATT CCACGCCTCC GACCAGCGTA CCTACGGCGA CGGCCTCAAG ACCATTTGGG CCACCGCATG CCGTGAACTG CAGCTGACCG ACGCCGTGCG CACCCGCGCC AAAGCCTTGG TCGGTTCGAT TCCCAATGCT GAGGACATGC TCGAATCCAT CGCCAACGCC ATTCCGGTCG AAGGCATGGA ATCCCTGATG CCCGCACTCG TGGACCATCT GGAACCGGTG GGCTCCATGC TTCCCAAGCA CGCCGTGATC CTCCTGAGCG ACCCGGAGAA ACTACGCCGC TCCGCCGAAG ACTTGGCAAA AACCGCGAAC GAGTTCCTAG CCGCCAGCTG GCATGTGGCC GCCTCCGGCC ACGGCGCCGG CGCGCCCATC AGCTTCGACG AAGCCAGCTT CCTCGACTAT GCGGAAACCA TCAGCTCCCT CGAATACTCC GAACATCCGG TGATTCGCCT CACCAGTTTC GGCGTGGACA CCACGTTGAC CGGCCATGTG CAGCTCGACG CCCAGAACCC GGCCGAATTC CGAGGGGATG AGGCCAAGGC CTCCCAAGGC ATCGAAGGCC TGCTCGATGC CGGCTTCCAC GTCACCATCA CCGCCGCTGC GGCCGGCACC TTGGCTAGGC TCAAGCGTGC GATCAACACT ACCGGCATCG CCAATTTCGA CGTCATCCGC TCTCAGGCCA TCGACGGCTT CGTGGACAAA GCCGCCAAAA TCGCCCTGCT CACCGAACGC GACCTGACCG GCCGCACTTC AGCCGTGGCC GTGGCCAAAA CGCCGAAACG CCGGCGCAAG GCCATCGACT TGGTGGAGCT CAAAAAAGGC GATTACGTGG TGCACGAGCA GCACGGCATT GGCCGGTTCA TCGAAATGCG TCAGCGCACC ATCGGCACCG GCGCCAACAA AACCACTCGC GAATACCTGG TCATCGAATA TGCGCCTTCC AAGCGCGGCG CCCCGGCGGA CAAACTGTTC ATCCCCACCG ACCAGCTCGA CCAGGTCAGC AAATACATCG GCGCCGAAGC CCCCAAGCTC AACAAGCTCG GCGGCTCCGA CTGGGCGGCC ACCAAGGCCA AGGCCCGCAA GCACGTCCAC GAGATCGCCG ACGACCTGAT CAAGCTGTAC TCCGCCCGCC AGCGCGCCAA GGGCTTCGCG TTCAGCCCGG ACACCCCATG GCAGAAAGAG CTGGAAGACG CCTTCCCCTA TCAGGAAACC GCCGACCAGC TCACCACCAT CGACGAAGTT AAATCCGACA TGGAAAAGCC CGTGCCGATG GACCGCCTCA TCTGCGGCGA CGTGGGCTTC GGCAAAACCG AAATCGCACT GCGTGCCGCC TTCAAGGCCG TGCAGGACGG CAAGCAGGTG GCCGTGCTCG TGCCCACCAC GCTGCTTGTC CAGCAGCATT ACGAGACGTT CAGCGAACGA TTCGAGGGTT TCCCGGTCAA TGTGGCGGCC ATGAGCCGAT TCCAGACCAC CAAAGAGATC AACGAGACCA TCGAGGGGCT GGAAACCGGC ACGGTGGACG TGGTCATCGG CACGCACAAG CTGCTGAACC CGAAAATCAA GTTCAAGGAT CTGGGACTCG TCATCATCGA TGAGGAGCAG CGTTTCGGCG TGGAACACAA GGAGACGCTG AAAGCCCTGC GCACCAACGT GGACGTGCTG TCCCTGTCTG CCACGCCTAT CCCGCGCACG CTGGAAATGG CCGTGACCGG CATTCGCGAG ATGTCCACGC TCGCCACCCC GCCCGAAGAC CGGTTGCCGG TGCTGACCTA TGTGGGCGCC TACGAGGATG CGCAGGTCAC CGCAGCCGTA CGCCGCGAAC TGCTGCGAGG CGGCCAGGTG TTCTATGTCC ACAATCGTGT GCAGGACATC TCGTCCATCG CCGACAAGAT TCACACGCTG GTGCCCGAGG CGCACGTCGG CATCGCCCAC GGCAAGATGG GGGAGAAGCA GCTCGACCAG ATCATCCGCG ACTTCTGGCA TCGCGACATA GACGTGCTCG TGTGTACCAC AATCATCGAG ACCGGTCTTG ATATCTCCAA TGCGAACACG CTGATCGTCG ACCATGCCGA CCGTTTCGGC TTGAGCCAGC TCCATCAGCT GCGTGGCCGC GTCGGCCGCG GCCGCGAGCG CGCGTACGCC TACTTCCTGT ACGACCCGTC CAAGCCGATG ACCGAGCAGT CCCATGACCG GCTCGCCACC ATCGCGCAGA ACACGGCGCT CGGCTCCGGT TTCGACGTGG CCATGAAGGA CTTGGAATTG CGCGGCACCG GTAACCTTCT GGGCGACGAG CAGTCCGGCC ATATCGAGGG CGTGGGCTTC GACCTGTACG TACGCATGGT GTCCGAAGCC GTGGAAAAGT ACAAGGAGCC CGAAGAGAAC GTCGAGCCGG TGGCCGTGTC CATCGACCTG CCCATCGAAG CGTCGATTCC GATCGAGTAC ATTGATTCGG ACAAGCTGCG TCTGGAAGCG TACCGCAAGC TCGCCTCCGC CCGCAACGAG GCCGATCTGA AGGATTTGGA AGAGGAACTT ACCGACCGTT ACGGCAAGCC GCCGGTCGAA TTCGAGACCC TGTTCGACGT GGCCCGTCTG AAGTTCAAGG CCCGCAAGCT CGGCATTTCG GAGATTCTCG CGCAATCCAA CCGCGTGCGC ATCGGTCGCA TCGACCCGCC CGAATCCATC CAGATGCGTA TGGGCCGTAT TTACAAAGGC ACCCAATACC GCCCGGTCAC CCACCAACTC ATCGTCCCCA CCCCGTTCAC CGGCTCCCTG GGCCAAGGTC CCATGAGCTC CGACCAGGTA GTCCTCTGGA CCAACCAGTT ACTTGATGAT TTGGCATGGA CCCCGTCGTC AAGCAAACGG CAGAGCCGTT TGTAG
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Protein sequence | MAGEATHPDL INGSLVGILS ELEQDKTFLK LAAGDIEASD DVDNSVLAGI PEGLRPALAA AIGQGVAGKP GKPVVLVVAS GREAEETVGS LRSWYDGDPN DIAQLEAWET LPHERLSPRA DTVASRMAVF RRLKHPSDTD SMFGPIRILV MPIRSLIQPV VQGLGDVEPL VFTVGEDLPL DEAAKRLIEN AYTRVDLVMD RGEFAVRGGI LDVFPPTAPH PVRIEFFGDE IDTIKEFHAS DQRTYGDGLK TIWATACREL QLTDAVRTRA KALVGSIPNA EDMLESIANA IPVEGMESLM PALVDHLEPV GSMLPKHAVI LLSDPEKLRR SAEDLAKTAN EFLAASWHVA ASGHGAGAPI SFDEASFLDY AETISSLEYS EHPVIRLTSF GVDTTLTGHV QLDAQNPAEF RGDEAKASQG IEGLLDAGFH VTITAAAAGT LARLKRAINT TGIANFDVIR SQAIDGFVDK AAKIALLTER DLTGRTSAVA VAKTPKRRRK AIDLVELKKG DYVVHEQHGI GRFIEMRQRT IGTGANKTTR EYLVIEYAPS KRGAPADKLF IPTDQLDQVS KYIGAEAPKL NKLGGSDWAA TKAKARKHVH EIADDLIKLY SARQRAKGFA FSPDTPWQKE LEDAFPYQET ADQLTTIDEV KSDMEKPVPM DRLICGDVGF GKTEIALRAA FKAVQDGKQV AVLVPTTLLV QQHYETFSER FEGFPVNVAA MSRFQTTKEI NETIEGLETG TVDVVIGTHK LLNPKIKFKD LGLVIIDEEQ RFGVEHKETL KALRTNVDVL SLSATPIPRT LEMAVTGIRE MSTLATPPED RLPVLTYVGA YEDAQVTAAV RRELLRGGQV FYVHNRVQDI SSIADKIHTL VPEAHVGIAH GKMGEKQLDQ IIRDFWHRDI DVLVCTTIIE TGLDISNANT LIVDHADRFG LSQLHQLRGR VGRGRERAYA YFLYDPSKPM TEQSHDRLAT IAQNTALGSG FDVAMKDLEL RGTGNLLGDE QSGHIEGVGF DLYVRMVSEA VEKYKEPEEN VEPVAVSIDL PIEASIPIEY IDSDKLRLEA YRKLASARNE ADLKDLEEEL TDRYGKPPVE FETLFDVARL KFKARKLGIS EILAQSNRVR IGRIDPPESI QMRMGRIYKG TQYRPVTHQL IVPTPFTGSL GQGPMSSDQV VLWTNQLLDD LAWTPSSSKR QSRL
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