Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BLD_0603 |
Symbol | csdB |
ID | 6362738 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bifidobacterium longum DJO10A |
Kingdom | Bacteria |
Replicon accession | NC_010816 |
Strand | - |
Start bp | 688459 |
End bp | 689733 |
Gene Length | 1275 bp |
Protein Length | 424 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 642679761 |
Product | selenocysteine lyase |
Protein accession | YP_001954547 |
Protein GI | 189439466 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0520] Selenocysteine lyase |
TIGRFAM ID | [TIGR01979] cysteine desulfurases, SufS subfamily |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.481618 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGTTGATT TTAAGGCGAT TCGGGCGCAG TTCCCGATTC TGGATCAGGA GATTCACGGG CACCCGCTCG TGTACCTGGA TTCTGCGGCC ACCTCGCAGA AGCCGAATGC GGTGATCGAC GCCGAGGCGA ACTTCTACCG TACAATTAAC GCCGGCGTGC ACCGTGGTGC GCACGAGCTG GCCGCCCGTA GCACCATGGC CTTTGAGGAG GCCCGAGCCA AGGTGGCCAA GCTGGTCGGC GCGAATGCGG CCGAAGGTGA AGAGGAGGTC GTCGTCACCG GTGGTGCCAC GGCCGGACTG AACCTGCTCG CCACCGCATT CGGCAATGCA TCGCTGGGGC GTGGGGGAGA AGCCGCCAAG CGTTTTGCCC TGAAGCCGGG CGATGAGATC GTCGTCTCGC GTGCGGAACA TCATTCGGTG CTGCTGCCGT TCCAGGAGCT GTCCTACCGT ACCGGCGCCA CCTTCAAGTG GATCGACCTG ACCGAGGACG GCCGTGTGCG TACGGACAAC CTCGACGAAG TCATCACCGA GCGTACCAAG GTCGTGGCCG TCACCCACGT GGGCAACGCC ACGGGTGCCA TCACCAACAT CGCCCCGATC ATCAAGCGTG CGCATGAAGT AGGTTCGATC TTCATCTTGG ACGCTTGCCA GTCCGTACCG CACCTCAAGG TCGATTTCCA CGCGCTTGAT GTGGACTTCG CCGCCTGGAG CGCGCACAAG ATGTACGGTC CTACCGGCGT CGGTTTCCTG TACGGTAAGC GCGACCTGCT CGAAGCCCTG CCGCCGGCCA ACTTCGGCGG CTCCATGGTC GAGCTCGCCT ACATGGACCA CGAGGCCCAA TACATGGCCC CTCCGGCCCG CTTCGAGGCC GGCACCCAGC CGGTCGCCCA AGTGGTGGCC GCAGGCGTCG CCGCCGAATG GATGATGAAC ATCGGGCTCG AGAACATCGA AGCCCATGAG AAGACCATCG CCGCCGAACT GCTCAAGCTC GGCGACGTCG ATGGCATTCG CATCCTCGGG CCGCGCGAAA ACGTGGACCG CATCGGCACC GTGGCGTTCG ACGTGGCCGG CGTGCATCCG CACGATGTGG GCCAGTTCAT CGACGCCCAG GGCATCGCGA TTCGCGTGGG ACACCACTGT GCCCAGCCGG TACACCGCCA CTTCGGCCTA TACGCATCCA ACCGTGCCTC CTCCGGTGTC TACAATTCGG TCGAAGATGC CCAAGCGTTG GTCGAAGCGG CCAAGGGCAT CCGTAAGTTC TTTGGAGTGG AGTAA
|
Protein sequence | MVDFKAIRAQ FPILDQEIHG HPLVYLDSAA TSQKPNAVID AEANFYRTIN AGVHRGAHEL AARSTMAFEE ARAKVAKLVG ANAAEGEEEV VVTGGATAGL NLLATAFGNA SLGRGGEAAK RFALKPGDEI VVSRAEHHSV LLPFQELSYR TGATFKWIDL TEDGRVRTDN LDEVITERTK VVAVTHVGNA TGAITNIAPI IKRAHEVGSI FILDACQSVP HLKVDFHALD VDFAAWSAHK MYGPTGVGFL YGKRDLLEAL PPANFGGSMV ELAYMDHEAQ YMAPPARFEA GTQPVAQVVA AGVAAEWMMN IGLENIEAHE KTIAAELLKL GDVDGIRILG PRENVDRIGT VAFDVAGVHP HDVGQFIDAQ GIAIRVGHHC AQPVHRHFGL YASNRASSGV YNSVEDAQAL VEAAKGIRKF FGVE
|
| |