Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BLD_0297 |
Symbol | rpoD |
ID | 6363828 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bifidobacterium longum DJO10A |
Kingdom | Bacteria |
Replicon accession | NC_010816 |
Strand | + |
Start bp | 368089 |
End bp | 369513 |
Gene Length | 1425 bp |
Protein Length | 474 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 642679445 |
Product | RNA polymerase sigma factor |
Protein accession | YP_001954241 |
Protein GI | 189439160 |
COG category | [K] Transcription |
COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
TIGRFAM ID | [TIGR02393] RNA polymerase sigma factor RpoD, C-terminal domain [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | TTGGCCACGA AGGAAACGAC GGCAACCAAG CAGACAGCCG AGTCCAGCGA GGAGACCGAG ACCAAGAAGA AGGCCAGCTC TACGACCACC GCACGCAAGA CTTCCGCCAA GAAGTCCAAG TCCGCAGAGC CCTCGAAAAA GACCACGCGC AAGTCCGCTG CGAAGAAAAC CGCGAAGAAG GCCAAGGACG ATGAGCTCGT CAAAGACGAG GACACTCAGG TCGATGACGA GCTTGATGAC GATGCCGAGG TCAACGACGA CGATTTGGAC GTTGACGACC TCGACGAGGA TCTTGACGAC GTTGACGAAG ACGATGCCGA CGACGAAGAC CTCGATGAGG ACGATGCCGA CGACGATGAT GTGGAAGACG ACGAGGACGA GGAAGAAGCC AAGTCCAAGG CACCCGAGCA GCCCAAGGAA AAGGGTGCCT ACGTGGTCTC CGACACGGAT GATGAGGAAG AAAACATCAT CCCCTCGGGC AATCCGAAGC GTCGTGTGAT TGCGGCCGGC GCAACCGCCG ACCCGGTCAA GGACTACCTG AAGCAGATCG GCCGTGTGAG CCTGCTGAAC GCCGAGCAGG AAGTCGACCT GTCCGAGCGC ATCGAGGCCG GCCTGTACGC CCAGCACCTG CTCGACACCG AAAGCGAAGG CATGGAGTTC AAGCGCAAGC GTGAACTCAA GTGGGCCGCC GCCGACGGCA AGAAGGCTAA GGACCATCTG CTGGAAGCCA ACCTACGACT TGTGGTCTCG CTCGCCAAGC GCTACACGGG TCGCGGCATG CTCTTCCTTG ATTTGATCCA GGAAGGCAAC CTTGGTCTGA TTCGTGCCGT CGAGAAGTTC GACTGGAAGA AGGGCTTCAA GTTCTCCACC TACGCCACGT GGTGGATTCG TCAGGCCATC ACCCGTGCCA TGGCCGATCA GGCCCGCACC ATTCGCGTGC CTGTGCACAT GGTCGAAGTG ATTAACAAGC TGTCCCGTGT ACAGCGCCAG ATGCTGCAGG ATCTGGGGCG TGAACCTACG CCGGACGAGC TGGCCCGCGA GCTGGATATG CCGGTTGAGA AGGTGCAGGA AGTGCAGAAG TACGGCCGCG AGCCGATTTC CCTGCACACC CCGCTTGGCG AGGATGGCGA TTCCGAGTTC GGTGACCTCA TTGAGGATAC CGACGCCATC GCTCCGTCCG ACGCCGTGGC CTTCTCCCTG CTGCAGGAAC AGTTCAAGCA GGTGCTGGAA ACCCTGTCTC CGCGTGAGGC CGGCGTCATC AAGATGCGCT ATGGCCTGGA AGACGGCCAG CCGAAGACGC TGGACGACAT CGGCCGTGTG TATGGCGTGA CCCGTGAACG CATCCGTCAG ATCGAGTCCA AGACCATGTC CAAGCTGCGC CACCCATCCC GTTCGCAGAC CCTGCGCGAC TTCCTGGATC AATGA
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Protein sequence | MATKETTATK QTAESSEETE TKKKASSTTT ARKTSAKKSK SAEPSKKTTR KSAAKKTAKK AKDDELVKDE DTQVDDELDD DAEVNDDDLD VDDLDEDLDD VDEDDADDED LDEDDADDDD VEDDEDEEEA KSKAPEQPKE KGAYVVSDTD DEEENIIPSG NPKRRVIAAG ATADPVKDYL KQIGRVSLLN AEQEVDLSER IEAGLYAQHL LDTESEGMEF KRKRELKWAA ADGKKAKDHL LEANLRLVVS LAKRYTGRGM LFLDLIQEGN LGLIRAVEKF DWKKGFKFST YATWWIRQAI TRAMADQART IRVPVHMVEV INKLSRVQRQ MLQDLGREPT PDELARELDM PVEKVQEVQK YGREPISLHT PLGEDGDSEF GDLIEDTDAI APSDAVAFSL LQEQFKQVLE TLSPREAGVI KMRYGLEDGQ PKTLDDIGRV YGVTRERIRQ IESKTMSKLR HPSRSQTLRD FLDQ
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