Gene BLD_0246 details

Gene Information

• Locus tag: BLD_0246
• Symbol: typA
• ID: 6363064
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Bifidobacterium longum DJO10A
• Kingdom: Bacteria
• Replicon accession: NC_010816
• Strand: +
• Start bp: 309891
• End bp: 311822
• Gene Length: 1932 bp
• Protein Length: 643 aa
• Translation table: 11
• GC content: 64%
• IMG OID: 642679393
• Product: membrane GTPase for stress response
• Protein accession: YP_001954190
• Protein GI: 189439109
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: 4
• Plasmid unclonability p-value: 0.107779
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGGCGGTTC GTGGAGATAT CCGTAATGTG GCGATTGTGG CTCACGTCGA TCACGGCAAG 
ACCACCCTGG TCAATGCCAT GCTTCAGCAG TCGCACGTGT TTTCCGAGCG TGAGGAAGTG 
CCGGATCGTG TAATGGATTC CAACGATCTG GAACGCGAGA AGGGCATCAC CATCCTCGCC 
AAGAACACGG CCGTGGAATA CACCGGTCCG CTGGCCGCCA AGTACGGCCA CCCGGAGGGC 
ATCACCCTCA ACATCATCGA CACCCCCGGC CACGCCGATT TCGGCGGCGA GGTCGAGCGC 
GGCATCTCCA TGGTTGACGG CGTCGTGCTG CTCGTGGACG CCTCCGAAGG CCCGCTGCCG 
CAGACCCGCT TCGTGCTGCG CAAGGCCCTC GAAGCCAAGC TGCCGGTCAT CCTGTGCGTG 
AACAAGGTCG ACCGCCCCGA CGCCCGTATC GAAGAGGTCG TCGGCGAAAC CTCCGACCTG 
CTGCTCGGCC TGGCCGACGA CGTGCAGCAC GAGGGCATCG ACCTGGACCT TGACCAGCTG 
CTTGAAATGC CGGTCATCTA CTGCGCCGCC AAGGCCGGCT ACGCCTCCGT GAACCAGCCC 
GCCGACGGTG GCCTGCCGGA CAACGACAAC CTCGAGCCGC TGTTCGAAAC CATCATCTCC 
ACCATCCCGG CCCCCGAATA CGAGGAGGGC GCCCCGCTGC AGGCTCACGT GGCCAACATC 
GACTCCTCCG ACTTCCTCGG CCGACTCGGT CTGGTCCGTA TCTACAACGG CACCCTTGAG 
AAGGGCAAGA CCTACGGCCT GTCCCGTGTG GACGGCTCCC TCGAGAACTT CCGCGTCTCC 
GAACTGCTGC GCACCCAGGG CCTCGAGCGT ATCCCGGTCG AATCCGCAGG CCCCGGCGAC 
ATCGTGGCCG TTGCCGGCGT TAACGACATC ATGATCGGCG AGACCATCGT CGACCCCAAC 
GACCCGAAGC CGCTGCCGCT CATCCATGTG GACGATCCGG CCATCTCCAT GACCTTCGGC 
ACCAACGACT CCCCGCTGGC CGGCACCGAG GGCAAGGACC ACAAGCTCAC CGCCCGCATG 
ATCAAGGACC GTCTGGACCG CGAGCTCATC GGTAACGTGT CCATCAAGGT GCTGCCCACC 
GACCGTCCCG ACGCTTGGGA AGTCCAGGGC CGTGGCGAGC TGGCGCTGGC CGTGCTTGCC 
GAGCAGATGC GCCGCGAAGG CTACGAGCTG ACCGTCGGCC GTCCGCAGGT GGTCACCAAG 
AAGATCGACG GCGTGATCAA CGAGCCGATG GAAAACACCA CCATCGACGT GCCGGAAGAG 
TACATGGGTA CCGTCACCCA GCTCATGGCC GACCGTAAGG GCCGTATGGA TGGCATGACC 
AACCACGGCT CCGGCTGGGT CCGTCTGCAG TTCACCGTGC CGTCCCGTGG TCTGATCGGC 
TTCCGCACCG CGCTGCTTTC CGCCACTCGT GGCACCGGCA TCTCCTCCTC CATCTCTGCC 
GGCTACGCGC CGTGGGCTGG CGCCATCACC ATTCGCCAGA ACGGTTCCAT GGTTTCCGAT 
CGCAAGGGTA TCGCCACCCC GTACGCCATG CAGCGTCTGC AGGCCCGTGG CAACTTCTTC 
GTCGAACCGC AGTCCCCGGT GTATGAAGGC CAGGTCGTGG GTGTGAACAA CAAGCCCGAC 
GAGCTGGACG TGAACATCAC GCTGGCCAAG CACATGACCA ACATGCGTTC CTCCACCGCT 
GACGTGCTCG AAACCCTGAC CCCGCCGATC AAGATGAGCC TTGAGGAGTC CCTGGACTTC 
GCCAACGAGG ACGAGTGCGT GGAAGTCACC CCGGAGTCCA TCCGCGTGCG CAAGATCATC 
CTCGGCCGTG AGGACTGGTA CAAGTGGCGC GCCAAGCAGC GCCGCCAGAA CGCCGCCCAG 
CAGGGTAAGT GA 

 

Protein sequence

MAVRGDIRNV AIVAHVDHGK TTLVNAMLQQ SHVFSEREEV PDRVMDSNDL EREKGITILA 
KNTAVEYTGP LAAKYGHPEG ITLNIIDTPG HADFGGEVER GISMVDGVVL LVDASEGPLP 
QTRFVLRKAL EAKLPVILCV NKVDRPDARI EEVVGETSDL LLGLADDVQH EGIDLDLDQL 
LEMPVIYCAA KAGYASVNQP ADGGLPDNDN LEPLFETIIS TIPAPEYEEG APLQAHVANI 
DSSDFLGRLG LVRIYNGTLE KGKTYGLSRV DGSLENFRVS ELLRTQGLER IPVESAGPGD 
IVAVAGVNDI MIGETIVDPN DPKPLPLIHV DDPAISMTFG TNDSPLAGTE GKDHKLTARM 
IKDRLDRELI GNVSIKVLPT DRPDAWEVQG RGELALAVLA EQMRREGYEL TVGRPQVVTK 
KIDGVINEPM ENTTIDVPEE YMGTVTQLMA DRKGRMDGMT NHGSGWVRLQ FTVPSRGLIG 
FRTALLSATR GTGISSSISA GYAPWAGAIT IRQNGSMVSD RKGIATPYAM QRLQARGNFF 
VEPQSPVYEG QVVGVNNKPD ELDVNITLAK HMTNMRSSTA DVLETLTPPI KMSLEESLDF 
ANEDECVEVT PESIRVRKII LGREDWYKWR AKQRRQNAAQ QGK