| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BLD_0222 |
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| Symbol | rpoE |
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| ID | 6363083 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bifidobacterium longum DJO10A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010816 |
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| Strand | + |
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| Start bp | 285088 |
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| End bp | 285876 |
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| Gene Length | 789 bp |
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| Protein Length | 262 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 642679369 |
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| Product | RNA polymerase sigma factor RpoE |
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| Protein accession | YP_001954166 |
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| Protein GI | 189439085 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.00279888 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | ATGCAATCCG GGCAGTCAGC CGGATCGGGC GAGTCCATGG CAGCCAAGCG CGCCAGATTT
GAACAGCTCG CCATGCCCGC CGTCAATGCA CTGTACCGGC AGGCGATGAG GCTGACCAAC
GATCCCGATG ACGCGCAGGA TCTGGTCCAG GACACCTTCG AACGCGGGTT CAAGGCCTTC
GACTCATTCC AGCCGGGCTC CAACTTCGAG GCGTGGATGA CCACCATCGA GCGCAATGCC
TACTTCAACC AGTATGCCAA GGCCAAGCGG CGCCCGCAGC GTGCCAACGA CTCCACCGGT
GAATACGACG ACTGGGACAT TTACGATGCC GCCGAACATA CGTCGGACGG GCTCAAGTCC
GCTGAAGAGG AATATTTGGA CGCCTTCGCG CCCGAGGAAA TCATGGCCGC GCTCGCCAAA
CTCTCGCCGG AACGCCGGCA GGTGTTCATC GACGCCGCCA TCGACGGCAA GTCCTACCAG
CAGGTGGCCG ATGAGCAGGG CGTGAAAATC GGCACGGTGA TGAGCCGCCT GAATCGCGCC
CGCACGCAAC TCAAGCGTGA GCTCGCCTCG TATGCGAAAG AGCGCGGGTA CGTGACTGGT
TCGTCGGCTG GTTCACCATC CGCGAAGTTG GGCGAAAACG TTGGTCGAAT CGCCGATTCC
GGCCATAATG GAAGTAGTGA ACAAACTGTT GGTAGCAATG GCGACACGCA AGCCGCAGTG
AGACATAGTC ATGCGACTGG CGCCCGCACG CCACAACAGT CAAGCAAGCT TTCGGGAAAG
GAGATCTGA
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| Protein sequence | MQSGQSAGSG ESMAAKRARF EQLAMPAVNA LYRQAMRLTN DPDDAQDLVQ DTFERGFKAF
DSFQPGSNFE AWMTTIERNA YFNQYAKAKR RPQRANDSTG EYDDWDIYDA AEHTSDGLKS
AEEEYLDAFA PEEIMAALAK LSPERRQVFI DAAIDGKSYQ QVADEQGVKI GTVMSRLNRA
RTQLKRELAS YAKERGYVTG SSAGSPSAKL GENVGRIADS GHNGSSEQTV GSNGDTQAAV
RHSHATGART PQQSSKLSGK EI
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