| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BCE_0103 |
|---|
| Symbol | rpoC |
|---|
| ID | 2747045 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bacillus cereus ATCC 10987 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003909 |
|---|
| Strand | + |
|---|
| Start bp | 111964 |
|---|
| End bp | 115575 |
|---|
| Gene Length | 3612 bp |
|---|
| Protein Length | 1203 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 41% |
|---|
| IMG OID | 637276850 |
|---|
| Product | DNA-directed RNA polymerase subunit beta' |
|---|
| Protein accession | NP_976431 |
|---|
| Protein GI | 42779184 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0086] DNA-directed RNA polymerase, beta' subunit/160 kD subunit |
|---|
| TIGRFAM ID | [TIGR02386] DNA-directed RNA polymerase, beta' subunit, predominant form |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.00223812 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGATAGATG TAAATAACTT TGAATATATG AAGATTGGAC TTGCTTCACC TGACAAGATT
CGTTCTTGGT CATACGGTGA AGTTAAGAAA CCAGAAACAA TTAACTATCG TACGTTAAAG
CCTGAAAAAG ATGGCTTGTT CTGTGAGCGT ATTTTCGGAC CACAAAAGGA CTGGGAATGT
CATTGCGGAA AATACAAACG TGTACGTTAT AAAGGTGTAG TTTGTGATCG ATGTGGCGTT
GAAGTAACGC GTGCGAAAGT GCGTCGTGAA CGTATGGGTC ATATCGAATT AGCTGCTCCT
GTATCTCATA TTTGGTATTT CAAAGGTATC CCGAGCCGCA TGGGACTTGT CTTAGACATG
TCCCCTCGCG CGCTTGAAGA AGTAATTTAT TTCGCTTCTT ATGTTGTAAC AGAAAGTGGA
GATACACCAC TTGATAAGAA GCAATTACTT TCTGAAAAAG AATACCGTGC ATATCGTGAT
CGATATGGTA GCACATTCCA AGCTGCTATG GGTGCAGAAG CGATTAAAAA GCTATTACAA
GACATCGATT TAGATAAAGA AGTAGACTTC TTAAAAGAAG AATTAAAAAC AGCACAAGGA
CAACGCCGTA CTCGTGCTAT TAAACGTCTA GAAGTATTAG AAGCATTCCG TAACTCTGGA
AATGAGCCAT CTTGGATGAT CTTAGATGTT CTACCAGTAA TCCCACCAGA ACTACGCCCA
ATGGTACAGT TAGATGGTGG ACGTTTTGCT ACTTCTGACT TAAACGACTT ATACCGTCGT
GTAATTAACC GTAACAACCG TTTAAAACGT CTATTGGACT TAGGTGCACC AAGCATTATC
GTTCAGAACG AAAAACGTAT GTTACAAGAA GCTGTAGACG CATTAATCGA TAATGGTCGT
CGTGGCCGTC CAGTTACTGG ACCAGGTAAC CGTCCATTAA AATCACTATC TCACATGCTT
AAAGGTAAAC AAGGACGCTT CCGTCAAAAC TTATTAGGTA AACGTGTTGA CTACTCTGGT
CGTTCTGTAA TCGTTGTAGG ACCGAACTTA AAGATGTACC AATGTGGATT ACCAAAAGAG
ATGGCGCTTG AACTGTTCAA ACCTTTCGTA ATGAAAGAGT TAGTTGAAAA AGGATTAGCA
CACAACATTA AGAGTGCGAA ACGTAAAATC GAGCGTGTAC AACCTGAAGT TTGGGACGTT
TTAGAATCTG TGATTAAAGA ACATCCAGTA CTTCTAAACC GCGCACCAAC ACTTCACCGT
CTTGGTATTC AGGCGTTTGA ACCTACATTA GTAGAAGGTC GCGCAATCCG TCTTCACCCA
CTTGTATGTA CTGCATACAA CGCGGACTTT GACGGTGACC AAATGGCCGT TCACGTACCT
TTATCATCAG AAGCACAAGC AGAAGCTCGT CTTCTTATGT TAGCGGCACA AAACATCTTG
AACCCGAAAG ACGGTAAACC AGTTGTTACT CCATCTCAGG ATATGGTATT AGGTAACTAC
TACTTAACAC TTGAGCGTGA AGGTGCAATC GGTGAAGGTA TGGTCTTCAA AGATGCGAAC
GAGGCATTAC TTGCATACCA AAATGGATAT GTACATCTTC ATACACGTGT TGCAGTAGCT
GCAAGCGCAG TAAACAACGC AACATTTACT GAAGAACAAA AGAGTATGCT TCTATTAACA
ACAGTTGGTA AATTAATATT TAACGAAATC TTACCAGAGT CGTTCCCTTA TATTAATGAA
CCAACAAATT CAAACCTTGA AAAAGAAACA CCAGCGAAAT ATTTCGTTGA AAAAGGTGCG
AACATTAAAG AGATTATTGC TAGTCGCGAA GAAGTGGCGC CATTCAGCAA GAAAATCCTT
GGTAACATCA TTGCGGAAGT GTTTAAACGT TTCAAAATTA CAGAAACGTC TCGCATGCTT
GACCGTATGA AAAACTTAGG ATTCAAGTAC TCTACAAAAG CTGGTATTAC AGTTGGGGTA
TCTGACATTC TTGTATTAGG TGAAAAAGAT GAAATTCTCC ACGAAGCACA AGCAAAAGTA
GATAATGTAA TTAAACAATT CCGTCGCGGT TTAATCACGG AAGAAGAACG TTACGATCGC
GTTATCTCTA TTTGGAGTAA TGCAAAAGAT GTTATCCAAG GAAAACTGAT GAAATCCTTG
AATAAACGCA ACCCAATCTT CATGATGAGT GATTCCGGTG CCCGTGGTAA CGCATCGAAC
TTTACTCAGC TTGCTGGTAT GCGTGGTCTG ATGGCCAATC CATCTGGTCG TATCATCGAA
CTTCCAATCA AATCAAGTTT CCGTGAAGGT TTAACAGTAC TTGAGTACTT CATCTCTACG
CATGGTGCGC GTAAAGGTCT TGCCGATACA GCACTGAAAA CTGCCGATTC TGGTTACTTA
ACACGTCGTC TTGTTGACGT TGCACAAGAT GTAATCGTTC GTGAAGATGA TTGTGGAACA
GATCGCGGTT TATTAATTGG TGCGATTAAA GAGGGTAATG AAGTTATCGA GTCATTATAT
GATCGTCTTG TTGGACGTTT TGCAAGAAAA ACTGTAAAAC ATCCTGAAAC AGGTGAAGTA
TTAGTTGCTG AAAATCAATT AATTACTGAA GATATCGCTC ATATCGTTGA AAATTCGGGT
GTTGAAACTG TAAACATTCG TTCAGCGTTC ACGTGTAACA CTCGCCACGG TGTATGTAAG
AAGTGTTACG GTCGTAACTT AGCAACTGGA ACAGACGTAG AGGTAGGGGA AGCGGTAGGT
ATTATCGCAG CTCAATCTAT CGGTGAGCCA GGTACACAGT TAACGATGCG TACGTTCCAT
ACAGGTGGGG TTGCCGGAGA TGATATCACT CAAGGTTTAC CTCGTATCCA AGAGATCTTC
GAAGCTCGTA ATCCGAAAGG TCAGGCAGTT ATCAGTGAAA TCGACGGTGT TATCGCAGCG
ATCAACGATG TTAAAGATCG CCAAGAAGTA GTTGTACAGG GTGAAGTTGA AACTCGTACG
TATGCTATTC CTTACGGTGC TCGTCTGAAA GTAATTCCAG GACAGCAAAT TAGCCACGGT
AAAGAGTTAA CAGAAGGTTC TATTGATCCG AAAGAATTAC TAAAAGTAAC GGACATTACG
GCAGTTCAAG AATACTTATT ACGTGAAGTT CAAAAAGTAT ACCGTATGCA AGGGGTAGAA
ATTGGTGACA AACACGTAGA AGTAATGGTA CGCCAAATGT TACGTAAAGT TCGTGTAAGT
GATGCAGGTG AAACAGATGT ATTACCAGGA ACATTACTAG ATATCCATCA GTTTACTGAT
GCAAATGCGA AGGTGTTACT ACAAGGTAAA CAACCAGCAA CAGCTAGACC TGTTCTACTT
GGTATTACAA AAGCTTCACT TGAAACAGAT TCATTCTTAT CTGCAGCATC GTTCCAAGAA
ACAACTCGTG TCTTAACTGA TGCAGCAATT AAGGGTAAAC GTGATGAGCT TCTAGGATTG
AAAGAAAATG TTATTATCGG TAAACTTGTT CCTGCTGGAA CAGGTATGAA TCGTTATCGC
AAAGTGGATC TTGTTAAAAC AACACAAGAT GACATGAATG TAGAAAACGA TGAAGTTTAT
GTGGAACAGT AA
|
|---|
| Protein sequence | MIDVNNFEYM KIGLASPDKI RSWSYGEVKK PETINYRTLK PEKDGLFCER IFGPQKDWEC
HCGKYKRVRY KGVVCDRCGV EVTRAKVRRE RMGHIELAAP VSHIWYFKGI PSRMGLVLDM
SPRALEEVIY FASYVVTESG DTPLDKKQLL SEKEYRAYRD RYGSTFQAAM GAEAIKKLLQ
DIDLDKEVDF LKEELKTAQG QRRTRAIKRL EVLEAFRNSG NEPSWMILDV LPVIPPELRP
MVQLDGGRFA TSDLNDLYRR VINRNNRLKR LLDLGAPSII VQNEKRMLQE AVDALIDNGR
RGRPVTGPGN RPLKSLSHML KGKQGRFRQN LLGKRVDYSG RSVIVVGPNL KMYQCGLPKE
MALELFKPFV MKELVEKGLA HNIKSAKRKI ERVQPEVWDV LESVIKEHPV LLNRAPTLHR
LGIQAFEPTL VEGRAIRLHP LVCTAYNADF DGDQMAVHVP LSSEAQAEAR LLMLAAQNIL
NPKDGKPVVT PSQDMVLGNY YLTLEREGAI GEGMVFKDAN EALLAYQNGY VHLHTRVAVA
ASAVNNATFT EEQKSMLLLT TVGKLIFNEI LPESFPYINE PTNSNLEKET PAKYFVEKGA
NIKEIIASRE EVAPFSKKIL GNIIAEVFKR FKITETSRML DRMKNLGFKY STKAGITVGV
SDILVLGEKD EILHEAQAKV DNVIKQFRRG LITEEERYDR VISIWSNAKD VIQGKLMKSL
NKRNPIFMMS DSGARGNASN FTQLAGMRGL MANPSGRIIE LPIKSSFREG LTVLEYFIST
HGARKGLADT ALKTADSGYL TRRLVDVAQD VIVREDDCGT DRGLLIGAIK EGNEVIESLY
DRLVGRFARK TVKHPETGEV LVAENQLITE DIAHIVENSG VETVNIRSAF TCNTRHGVCK
KCYGRNLATG TDVEVGEAVG IIAAQSIGEP GTQLTMRTFH TGGVAGDDIT QGLPRIQEIF
EARNPKGQAV ISEIDGVIAA INDVKDRQEV VVQGEVETRT YAIPYGARLK VIPGQQISHG
KELTEGSIDP KELLKVTDIT AVQEYLLREV QKVYRMQGVE IGDKHVEVMV RQMLRKVRVS
DAGETDVLPG TLLDIHQFTD ANAKVLLQGK QPATARPVLL GITKASLETD SFLSAASFQE
TTRVLTDAAI KGKRDELLGL KENVIIGKLV PAGTGMNRYR KVDLVKTTQD DMNVENDEVY
VEQ
|
|---|
| |