Gene BBta_7654 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_7654 
Symbol 
ID5155627 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp8053203 
End bp8055881 
Gene Length2679 bp 
Protein Length892 aa 
Translation table11 
GC content67% 
IMG OID640562297 
Productdiguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) 
Protein accessionYP_001243405 
Protein GI148258820 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones28 
Fosmid unclonability p-value0.577778 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTTGCAA GCGAGTTCCC ACCGGCCGCA TCTGCGAACC TGCTTTCGGC CGCGCTCGAT 
CGTGTCTCCG AGGCGATTCT CTTTCTCGAC GCAGAGGGCC GTGTCCATCA CGCCAACCAG
GCGGCGGTTG CCTTGTTGCG ACGCGACCTC AAGGACCTGA TCGGCGCCGA TCTCGATCGT
CTCGGCCTGC CGGCCGAGCA GCTTCGCGCA ATGACCAAGA GCGAAGCCGA GGCGCCCGCA
GATGCGCCAC ACGCGGCCGA GGCGGGCGAT GCCGGCCGTG AGATGATGCT CCGCCACGCG
GATGGCTCCC GCTGCCGGGT GCGCGCTATC GTTCGCGATC TCCCGTCCGA CCACGCGCCG
ATGCATTCGC TGCTGCTGCT GCGCGACGTG ACGTCCGATG TCGAGATGCG CGAGCGCAAC
GCACTGCTGA CCTCGGTCGC CGACCGCAGC AACCGCGCCG TCATCGTCAC CGACCACGAG
TTGAAGATCC TCTATACCAA CGCGGCCTTC TGCAGCATCT TCGGCTACAG CAGCGCGGAG
GTGCTCGGGC GGCAAGTGGA GACACTTCTG GTCGGGCCCT GTACCGATCC CGCGACGGTC
GAACGCCTGA AGCAATGCGT GGAGGATGAT CGGGGCGTCG AGGACGACCT GATGATCTAC
GACAAAGCGG GCTGCGAGAT CTGGACCACG GCCCACGTCA AGGCGCATCG CAACCAGCGC
GGCAAGGTCA AATATCTGGT CGGGCTGCTC AGCGATATCC GCGAGACCAA GCAGCTGCGC
TCCCTGCAGC AGCTGATCAT GTCGTCCTTG GCCTCCGACA TCGCGATCGC GACCATTGCC
GACCAGCTCT GCCGCCGGGT CGAGGAACTC GCCCCCGACG TCGTCTGCTC GATCCTCCAT
GTCGACTCGG GAGGACGGAT TCATCCGCTC GGCGGCCCAA GCCTGCCGGC GGACTACTCG
TCCGGCCTGG ACGGCGTTGC GATCGGTCCC GACGTCGGTT CCTGTGGCAC GGCCGCCTAT
CTGTGCGAGC CGGTGCTGGC CCGCGACATC GACAGCGATC CGCGTTGGCA ACCCTATAAG
GCTGGTCCGC TCGGAGCGGG GCTGCGCGCC TGCTGGTCGA CGCCTATCCA GGGCAAGGAT
GGCCGGGTGA TCGGCACCTT CGCCTTCTAT TTCCGCGAAT GCCGAGGCCC GAGCCCCTGG
CACGAGCAGA TCGTCGCCGC CTGCGTCCAG CTCGGCGCGC TCGCCATCGA GCGGCAGGAG
GTGAGGTCGA CGATCTCGCA GGTCGCCTAT CACGACATGC TGACGGGCCT GCCCAATCGC
GCCCGCATCC CCTCGATGAT CGCCGAGGCT ATCAATGCCT GTCCCGAGGG CAGCCATCTC
GCGATTGCCT TCCTCGACGC CGACAATTTC AAGGACGTCA ACGACACGCT GGGTCATGCC
GCCGGCGACG AGTTCCTGGT TGCCTTCGCC AACCGACTCC GCGCCCAGAT CCGTCCCGGT
GACATGCTGG GCCGGCTTGG CGGCGACGAG TTCGTGATCG TGCTGCAGAA CCGCGATGCC
CTCGAGGCGT CGCTGGCGGC GGCGCGGATC ACCGCCGCGC TGGCGATGCC GCTGACGATC
GGCAAGCGCC AGGTGCCGAT GTCGGCGAGC ATGGGGCTCA GCCTGTATCC GGACAACGCC
ACCGACATCG AGACCCTGAT CAAGCAGGCC GATGGGGCGA TGTACAAGGC CAAGCGCGCC
GGGCGCGCCA CCTATCGCTT CTTCAGCGCC GACATCGACA AGCTCGCCGA GGAACGGCTG
ATGCACTCGA CCGCGCTGCG CGAGGCGATC GCGAGCGAGG CCCTGACGCT GAATTATCAG
CCGCAGATCT GCACCCGCAA TGGCGCGATC CATGGCGTCG AGGCGCTGGC GCGCTGGCAT
GATCCGGTGC TGGGCGAGGT CTCACCTTCC AAGTTCATTC CGCTCGCCGA GGAATGCGGT
CTGATCGAGC AGATCGGTGT GTGGTCGATC AAGCAAGCCT GCCAGCAGAT GGCGTCGTGG
CGGCGCGCCG GTCTCGACAT CCCCTGCATC TCGGTGAACC TGTCGCCGAT CAACTTCCAG
AACGTCAATC TGGCGGCCGT GGTGGCTCAG ATCCTGGCTG CCAACGACCT GCCGGCGAAG
ATGCTGATGC TCGAGATCAC CGAGGGCGTG ATTCTCAATG AGCGCGCCAC CGTGATCGCC
ACCATGAGCG AGCTGCGCAA CATGGGGGTG GGCCTGTCGC TGGACGATTT CGGTACCGGC
TATTCCAGCC TCAGCCGTCT GGCGCAGCTG CCGATCCACG AACTCAAGAT CGACCGCAGC
TTCATGCGCG ATTTCGAGAA CGACCAGGGC ACGCGGGCGA TCGTGACCGC CGTGGTCAGG
GTCGGCCAGA GCCTGGACGT CAAGGTCGTC GCCGAGGGCG TCGAAACCGA GCCGCAGCGG
CGGCTGCTGG CCGAGCTTGG CTGCGATGCG ATGCAGGGCT TCCTGTTCGC GCGGCCGATG
GCCGCTGGAG CGTTCAGCCG CTGGCTGCTG GACTACAGCG CGCATCGCGC CAGCCTCATG
CTGCGGCAGG TCGGCCGCGC ACTGGCGCAG GCGGCCGGCG TCAGCGAGGT CAGCGAGGGC
GAGCGCTTAT CGCCTGCTGC GATCGCCGCA GCCAGTTGA
 
Protein sequence
MLASEFPPAA SANLLSAALD RVSEAILFLD AEGRVHHANQ AAVALLRRDL KDLIGADLDR 
LGLPAEQLRA MTKSEAEAPA DAPHAAEAGD AGREMMLRHA DGSRCRVRAI VRDLPSDHAP
MHSLLLLRDV TSDVEMRERN ALLTSVADRS NRAVIVTDHE LKILYTNAAF CSIFGYSSAE
VLGRQVETLL VGPCTDPATV ERLKQCVEDD RGVEDDLMIY DKAGCEIWTT AHVKAHRNQR
GKVKYLVGLL SDIRETKQLR SLQQLIMSSL ASDIAIATIA DQLCRRVEEL APDVVCSILH
VDSGGRIHPL GGPSLPADYS SGLDGVAIGP DVGSCGTAAY LCEPVLARDI DSDPRWQPYK
AGPLGAGLRA CWSTPIQGKD GRVIGTFAFY FRECRGPSPW HEQIVAACVQ LGALAIERQE
VRSTISQVAY HDMLTGLPNR ARIPSMIAEA INACPEGSHL AIAFLDADNF KDVNDTLGHA
AGDEFLVAFA NRLRAQIRPG DMLGRLGGDE FVIVLQNRDA LEASLAAARI TAALAMPLTI
GKRQVPMSAS MGLSLYPDNA TDIETLIKQA DGAMYKAKRA GRATYRFFSA DIDKLAEERL
MHSTALREAI ASEALTLNYQ PQICTRNGAI HGVEALARWH DPVLGEVSPS KFIPLAEECG
LIEQIGVWSI KQACQQMASW RRAGLDIPCI SVNLSPINFQ NVNLAAVVAQ ILAANDLPAK
MLMLEITEGV ILNERATVIA TMSELRNMGV GLSLDDFGTG YSSLSRLAQL PIHELKIDRS
FMRDFENDQG TRAIVTAVVR VGQSLDVKVV AEGVETEPQR RLLAELGCDA MQGFLFARPM
AAGAFSRWLL DYSAHRASLM LRQVGRALAQ AAGVSEVSEG ERLSPAAIAA AS