Gene BBta_7611 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_7611 
Symbol 
ID5154546 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp8002387 
End bp8004402 
Gene Length2016 bp 
Protein Length671 aa 
Translation table11 
GC content63% 
IMG OID640562255 
Productdiguanylate cyclase/phosphodiesterase 
Protein accessionYP_001243363 
Protein GI148258778 
COG category[T] Signal transduction mechanisms 
COG ID[COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.837679 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones25 
Fosmid unclonability p-value0.165016 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCGGATG TGAGGGGCTA TTTCGCTCGC GCTGCGGACT TGTTTCGCGT GCCTCCAGAC 
CAGCCCGAGC TGACGCGGGC GCAGTTCCAG GCGTTCTCCA AACAGGTGCC GCTGCTCTAT
TTCATTCTGA TCACCAACAG TCTCGCCCTC GCTTATACGT TCCTGCCGCT GGCGCCGATA
TGGCTGACGA TGGCGGTCCC GGCGCTGCTG TCGGCGCTGA CCGGCTTTCG CATGCTGTGG
TGGTTGCGCC AGCGCGATGT CGGAGCCAGC AGCGATCAGA TTCTGCACAA GCTGCGCGTC
ACCAATCGAA TCGCCGGGCC GATCGGAGCG TTGTTCGTCG CCTGGTCGTT CGCGCTGTTT
CCCTATGGCG ATCCGTTCGC GAAGGGGCAG GTCGCTTTCT ACATGGCCGT CACGGTCATC
GGCATCATCT TCTGCCTGAT GCATCTGCGA TCGGCCGCGC TGATCGTCAC GCTCGTGGTG
ATCGTGCCCT ATGTGATCTT CTTCATGTCC ACCGGCGTCC ACGCGTTGCG TGCAATTGCA
GTCAATCAGC TGCTCGTCTC GTGCGCGATG GTGATCGTGC TCTTTATCTA CTACCGGGAT
TTCGCCGCGC TGGTCGCCAG TCGCAAGTCT CTGCTGGCCG AGCAGGCCGC GACCCAGGCG
CTGTCGGACG AGAACTTCCG TCTCGCCAAT CTCGATTCGT TGACGGATCT TCCCAATCGC
CGTCGCTTCT TCTCGGAGCT TGCGCAAGCC TTCGAGGACG CCGAGCGGGA CGGCACGCGG
CTCGCGGTCG GCATCATCGA TCTCGATGGC TTCAAGCCCG TCAACGACAC CTACGGCCAT
AGCGTCGGCG ATCGCGTCCT GATCGAGGCT GCGCGCCGGA TCAGCGACGT GTGCGACAGC
GTGGGCGACA ACGTGCATCT CGCGCGGCTC GGTGGCGATG AATTCGGACT GATCGTCGCG
GGCGATCCGG AGGATGACGA GCTTCTCGCG CTTGGACGAC AAATCACCGA GCGGATCCAG
CTGCCCTACG AGCTCGATAC GGCGCATACG GGAGTGTCGT GCTCGACAGG TTTCGCGCTG
TATCCTCGCT CCGCGACCGC CGCCGATGCG TTGTACGAAT GCGCCGACTA TGCGCTGTAT
CATGCCAAGC GCCATGCGCG CGGCCAGACG GTGATCTTCT CGAGCGAGCT GGAGGCGGAG
ATCCGCAGCC GCAACGTGAT CGAGCATCTG CTGCTTGCCG CCGATTTCGA GCGCGAAATG
GAGCTGGCGT TCCAGCCCAT CGTCGACGCC GCGAGCGCGC GCACGACGGG CTTCGAGGTG
CTCGCACGCT GGCGCAGTCC CAAGCTGGGC CTGGTCTCGC CGTCGGCTTT CATTCCGGCT
GCCGAGCGCA TCGGAGTCAT CCGCACGCTG ACGCGCGTCC TGCTGGTGAA GGCGCTGGCT
GCGGCGCGGA CCTGGCCGGA GGACATCCGG ATGTCCTTCA ATCTGTCGGC GCATGACATC
TGCTCGCCTG ACGGCATTCT GCCGCTGATC TCCGTCATTC ACGCCAGCGG TGTGCCGCCA
CGGCGCATCG AGTTCGAGAT CACCGAGACC GCGGTGACCT TCGATTTCGT TCATGCCGAG
CAGTCGATCT CAGCGCTCAA AGCCATCGGT TGCGGGATCT CCCTGGATGA TTTTGGCACC
GGCTATTCCT CGCTCAGCCA CGTTCACCGG TTGCCGCTCG ACAAGCTCAA GGTCGATCGC
AGCTTTGTCC ATGACGTGAA CGCCAACCCG ATCAGCCACA AGATCATCAA GTCGCTGACC
GGCCTCTGCG CCGACATGGA GATTTCGTGC GTCGTCGAGG GCGTCGAGAC CAAGGAGCAG
CTCGACAGCC TGCGCCGGCT CGGGGCCGAC TACATTCAGG GTTATTATTT CGCTGAGCCG
ATGCCGGCAG ACGCCGTGCT CGGCTTCCTG ACCAGGGAGC GCCAACGTCT GGCCGAGCCG
TCCGAAGGCA AGCTCGCCGG CGCCGGCGCT GCGTAG
 
Protein sequence
MPDVRGYFAR AADLFRVPPD QPELTRAQFQ AFSKQVPLLY FILITNSLAL AYTFLPLAPI 
WLTMAVPALL SALTGFRMLW WLRQRDVGAS SDQILHKLRV TNRIAGPIGA LFVAWSFALF
PYGDPFAKGQ VAFYMAVTVI GIIFCLMHLR SAALIVTLVV IVPYVIFFMS TGVHALRAIA
VNQLLVSCAM VIVLFIYYRD FAALVASRKS LLAEQAATQA LSDENFRLAN LDSLTDLPNR
RRFFSELAQA FEDAERDGTR LAVGIIDLDG FKPVNDTYGH SVGDRVLIEA ARRISDVCDS
VGDNVHLARL GGDEFGLIVA GDPEDDELLA LGRQITERIQ LPYELDTAHT GVSCSTGFAL
YPRSATAADA LYECADYALY HAKRHARGQT VIFSSELEAE IRSRNVIEHL LLAADFEREM
ELAFQPIVDA ASARTTGFEV LARWRSPKLG LVSPSAFIPA AERIGVIRTL TRVLLVKALA
AARTWPEDIR MSFNLSAHDI CSPDGILPLI SVIHASGVPP RRIEFEITET AVTFDFVHAE
QSISALKAIG CGISLDDFGT GYSSLSHVHR LPLDKLKVDR SFVHDVNANP ISHKIIKSLT
GLCADMEISC VVEGVETKEQ LDSLRRLGAD YIQGYYFAEP MPADAVLGFL TRERQRLAEP
SEGKLAGAGA A