Gene BBta_6958 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_6958 
Symbol 
ID5148914 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp7293999 
End bp7295507 
Gene Length1509 bp 
Protein Length502 aa 
Translation table11 
GC content68% 
IMG OID640561640 
Productdiguanylate cyclase 
Protein accessionYP_001242751 
Protein GI148258166 
COG category[T] Signal transduction mechanisms 
COG ID[COG2199] FOG: GGDEF domain 
TIGRFAM ID[TIGR00254] diguanylate cyclase (GGDEF) domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones46 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGCTGGA CACGCCGAAC AGGCCGGGCA AAGCAGCCTT GGCGACTCTC GGCGCGCACG 
CTGATCAGCT GCTCCATTTC GACCATCATC GGCTTCTCCG CAATCTGCGC CAGCGTCATG
GTCGACCTGC GCCGCGGCGA GGAAGTCCGC GCCCGGCAGG CCCTGGAGAA CATGGCCGCC
AGCATTGCCG CCGACATCAG CCGCAACGTC GAGCTTTACG ATCTCTCGCT GCGGGCCGTG
GCGGGCAACC TGTTGCTGCC TGAAATTCAC GAGGTCAGCA AGCCGCTTCG CCAACTGATC
CTGTTCGATC GCGCCTCGAC CGCCAGGAAT TTCGGGACGA TCCAGGTGTT CGACGCCCAG
GGTCGGCTGA TCATCGATTC CGCCACGCTC GATCCGAGGC CCGAGGATCG CAGCGACGCC
GATTTCTTCC AGGTCCATCG CGACCGCCCC GATGCCGGCC TCTATGTCGG ACGCCCGGCG
CAGCATCATG GCCCCTCTTC CATCGTCCTG AGCCGCAGGA TCTCGACGCC CGACGGGCGC
TTCGCCGGGG TCGTCGCCGG CTCGCTTCGC CTCAGCTATT TCCGCGACCT GTTCGGGAGC
CTGACGCTCG GCCCCGGCGA CAGCATCACG GTGTTCAGAC GCGACGGCAC CCTGATCGTC
AGCGCACCGT TCGATCCGGA CGCGATCGGC CGCAACCTGG CGCGGGCCCC GGCAGTGACC
CGTGCGCTGA CCGAGCCGAC GGGATGGTCG AGCAGCTACG GCGCGCTCGA CGATCTGCCG
CGGCTGCTGG TCTGGCGCAA CGGCACCGAG CCGCTGGTGG TGGTGGCCAG CAAGACTTGG
GAGAGCGTCT ACGCCTATTG GCGCCATGAG GCCATGCAGA TCGGCGCGAT GATGCTGGCG
CTCATCGTGT TCGTTCTGGC GGCCACGCAG GTTGCCGCGC GCGAGATCCA GTTGCGCACC
AAGGTCGAGA CCAGACTGGA GCAGCTTGCC ACGACCGATC CGCTGACCGG CCTGAAAAAC
CGGCGCAAGT TCGACGAGAC GATCGAGGTC GAATGGCGGC GGGCGCTGCG CCACCATGCA
CCGCTGGGGC TACTGATGAT CGATGCCGAC CACTTCAAGA GCTACAACGA CAATCACGGG
CATCAGGCGG GCGACCAGGT GCTGGTCGGC ATCGCCGTCT GCATTTCCGA TTCGGTCCGC
CGGGCCGGAG ACTGCGCGGC GCGCTATGGC GGCGAGGAGT TCGCCGTGCT GTTGCCCGGG
ACGTCGGACG CCGATGCCCT TCACGTCGCC GAGACGATCC GCACCAAGGT CGCGATCTGG
GCGGGCGAGG CGGGCAACAC CTCGGTCAGC ATCGGCGTCG CCAGCATCAC GCCATCGCGC
GATACCGACT GGACCGCGCT GATGAACGCG GCCGACAGAG CACTGTACAT GGCCAAGGCG
GCGGGCCGAA ACCGCTGCGT CGCCGCGACG GTGCCCGGCC TGGCGTCAGC AGCCGCGCTG
GCGGCGTGA
 
Protein sequence
MRWTRRTGRA KQPWRLSART LISCSISTII GFSAICASVM VDLRRGEEVR ARQALENMAA 
SIAADISRNV ELYDLSLRAV AGNLLLPEIH EVSKPLRQLI LFDRASTARN FGTIQVFDAQ
GRLIIDSATL DPRPEDRSDA DFFQVHRDRP DAGLYVGRPA QHHGPSSIVL SRRISTPDGR
FAGVVAGSLR LSYFRDLFGS LTLGPGDSIT VFRRDGTLIV SAPFDPDAIG RNLARAPAVT
RALTEPTGWS SSYGALDDLP RLLVWRNGTE PLVVVASKTW ESVYAYWRHE AMQIGAMMLA
LIVFVLAATQ VAAREIQLRT KVETRLEQLA TTDPLTGLKN RRKFDETIEV EWRRALRHHA
PLGLLMIDAD HFKSYNDNHG HQAGDQVLVG IAVCISDSVR RAGDCAARYG GEEFAVLLPG
TSDADALHVA ETIRTKVAIW AGEAGNTSVS IGVASITPSR DTDWTALMNA ADRALYMAKA
AGRNRCVAAT VPGLASAAAL AA