| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_6947 |
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| Symbol | |
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| ID | 5155382 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 7277812 |
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| End bp | 7280688 |
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| Gene Length | 2877 bp |
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| Protein Length | 958 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640561629 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_001242740 |
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| Protein GI | 148258155 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 31 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCGTCTGA TCAGGTGCCT GGCGTCATTG GCGCTGGGCC TCGTGATGTG TGGTGCCGCT
GCCCCCGCTC AGGCCGTTGA CGCCGTCAGC GTCCGCAGCG ACGCGCCTGC CATCGACCTC
ACCGGCATTC TGGATCATCA GCGCAGCGAG AACGACCGCA TCCAGGTCTC TACCGCGCCC
GGCACCGACG GCATCGTGCG CCGCATCGAG GTGCGGGCCC GCGAGGGCGG CCAGCACTGG
ATCGTGTTTG CGCTCGCCAA CAACACCGAC GACCAGCTCG ACCGCCTGAT CGTCGCGCCG
CACTACCGCG TTGTCGGCTC CGGCGTGTTC TGGCCCGATC TCGGCCTGTC GCGCATCGCC
ACCATCACGC CTTCGATCGG CGACCTCCCC GAGCGGCAGG AGAGCCCGAC CGCCGACGTC
TTCCGCGTTA CGCTCGATCC CGGCTCGGTC GTCACCTTCG TGGCTGAACT GCGCACCGAC
AAGCTGCCGC AGCTGTATCT GTGGGAACCC GAGGCCTACA AGGACAAGGT CAACTCGTTC
ACGCTGTACC AGGGCATCGT GATCGGCATT TCCGGCCTGC TGGCGCTGGT GCTCACCATC
CTGTTCGTGG TCAAGGGCAG CATCATGTTC CCGGCCGCCG CGGCGCTGGC CTGGGCGGTG
CTGGTGTATA TCGGCGTCGA TTTCGGATTC TGGGGCAAGG TCCTGGACAT GTCGAACAAT
GCCGAGCGGG TCTGGCGCGC CTCCGGCGAG GCGATCCTCG CCGCCACCTT GCTGGTGTTC
CTGTTCGCCT ATCTCAACCT GTCGCGCTGG CACGTTCGCT ACTCGCACAT CACGCTGGGC
TGGCTGTTCT TCCTCGGCTC GCTGGTCGCG GTCGCGCTGT TCGATCCGGC GGTGGCCTCG
GGCATCGCGC GGATGTCCCT GCTATTGATC GCCGTGCTCG GCTTCGCGCT GATCGTCTAT
CTCTCCAGCC ATGGCTTCGA CCGCGCGGTG CTGCTGATCC CGACCTGGTT CCTGCTGGCC
GTCTGGGTCG GCGCCGCCGG CATGACGGTG GCGGGCCAGG TCACCAACGA TATCGTCGGT
CCGGCGCTGC TCGGCGGCCT CGTGCTGATC GTGATGCTGA TCGGCTTCAC GGTCATGCAG
CACGCCTTCG CCGGCGGCGG CGCCAGCACC GGCATCGTCT CCGACGTCGA GCGGCGCGCG
CTGGCGCTGG CCGGCTCCGG CGACCTGATC TGGGACTGGG ACGTCTCCGC CGACAAGGTG
TTCACCAGCC CGGAGACCGA GAGCCTGCTC GGCCTCAAGC GCGGCACACT CGAAGGCCCG
GCGGCGAAAT GGCTCGAGGT GCTGCACCCG CTCGATCAGG ACCGCTTCCG CGCCGCGCTG
GACAGCGTGC TCGACCAGCG CCGCGGCCGC CTGGTGCAGG ACTTCCGGCT GCGGACACCG
GATGGTCACT TCATGTGGTT CGCACTGAAG GCGCGCCCCG TGGTCGGCTC CGACGGCGAG
GTCTCGCGCG TGGTCGGCAC GCTGACCGAC GTGACCGAGT TCAAGAATGC CGAGGAGCGC
CTGCTCCACG ACAGCGTGCA TGACAATCTG ACTGGCCTGC CCAACCGCAA GCTGTTCATC
GATCGCCTCG CCGCCGTCGC CAACTTCGCC AAGTCGATGC CGACCCTGCG GCCGACCCTG
ATGGTGATCG ATCTCGACCG CTTCAAGCAG GTCAACGATT CCGTCGGCAT CGCCGTCGGC
GATTCCATCC TGCTGACCCT GGCGCGGCGG CTGTCGCGCA CGCTCAAGCC GCAGGACACG
CTGGCGCGGC TGGCCGGCGA CCAGTTCGGC CTGATCCTGT TGTCCGAGCA GGACCCGGCG
CGCATCACCG CCTTCGCCGA GACCATCCGC AAGACCATCC GCGCCCCGAT CGCCTTCAAC
GAGCGCGAGA TCTTCCTGAC CGCCTCGATC GGCCTCGCTT TGTCCGACCC GCAGGTGCAG
CTGTCGGAGG ACATCATCAA GGATGCCGAG CTTGCGATGT ATCATTCCAA GCGGATCGGC
GGCGACCGCA TCGACGTCTA CAAGCCGGCG ATGCGCGCCC GCAAGAACGA CCGCCTGACC
CTGGAGAGCG AGCTGCGCCG CTCGATCGAA CGCCAGGAGA TCACGATCCT GTATCAGCCG
ATCGTGCGGC TGGAGGATCG CTCGATCGCC GGCTTCGAGG CCCTGGCGCG CTGGGATCAT
CCGAAGCTCG GCCGGATGTC GCCGAACGAG TTCATCACCA TCGCCGAGGA GATCGGGCTG
ATCGTCGATC TCGGCACCTT CGTGCTCGAC CAGACCGCGC GCCAGCTCTC GGTGTGGCAG
CGCGCGACGC GGTTGCGCGA GCCGATCTTC GCCAGCGTCA ACGTCTCCTC GCGGCAGCTG
CTGCGCCACG ACCTGATCCA CGACATCCGC TCGGTGCTGG CGCGCTCGTC GGTCGCCCGC
GGCTCGCTGA AGATCGAGCT GACGGAGTCG CTGGTGATGG AGAACCCGGA GCATGCCGCG
CAGATGCTGA CGCGCATCCG CGAGCTCGGC GTTGGCCTAT CGATCGACGA TTTCGGCACC
GGCCATTCCT CGCTCGCTTA TCTGCAGCGT TTCCCGTTCG ACACGTTGAA GATCGACCAG
TCGTTTGTGC GCACCACCGC GCGCGGCACC CGCCCGGTGA TCCTCAAATC GATCATCGCG
CTGGCCCATG ATCTCGGCAT GGACGTGGTG GCGGAAGGCG CGGAGTCGGA TTCGGATGCC
GTGGAGCTCT ATCAGCTCGG CTGCGAATAT GCCCAAGGCT ACGTCTTCGG CGAGCCGATG
GATGCCGATG CCGCGATGCG GCTGTTGACG GAAGAGCGGC TCGAAGCGGC GAGCTGA
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| Protein sequence | MRLIRCLASL ALGLVMCGAA APAQAVDAVS VRSDAPAIDL TGILDHQRSE NDRIQVSTAP
GTDGIVRRIE VRAREGGQHW IVFALANNTD DQLDRLIVAP HYRVVGSGVF WPDLGLSRIA
TITPSIGDLP ERQESPTADV FRVTLDPGSV VTFVAELRTD KLPQLYLWEP EAYKDKVNSF
TLYQGIVIGI SGLLALVLTI LFVVKGSIMF PAAAALAWAV LVYIGVDFGF WGKVLDMSNN
AERVWRASGE AILAATLLVF LFAYLNLSRW HVRYSHITLG WLFFLGSLVA VALFDPAVAS
GIARMSLLLI AVLGFALIVY LSSHGFDRAV LLIPTWFLLA VWVGAAGMTV AGQVTNDIVG
PALLGGLVLI VMLIGFTVMQ HAFAGGGAST GIVSDVERRA LALAGSGDLI WDWDVSADKV
FTSPETESLL GLKRGTLEGP AAKWLEVLHP LDQDRFRAAL DSVLDQRRGR LVQDFRLRTP
DGHFMWFALK ARPVVGSDGE VSRVVGTLTD VTEFKNAEER LLHDSVHDNL TGLPNRKLFI
DRLAAVANFA KSMPTLRPTL MVIDLDRFKQ VNDSVGIAVG DSILLTLARR LSRTLKPQDT
LARLAGDQFG LILLSEQDPA RITAFAETIR KTIRAPIAFN EREIFLTASI GLALSDPQVQ
LSEDIIKDAE LAMYHSKRIG GDRIDVYKPA MRARKNDRLT LESELRRSIE RQEITILYQP
IVRLEDRSIA GFEALARWDH PKLGRMSPNE FITIAEEIGL IVDLGTFVLD QTARQLSVWQ
RATRLREPIF ASVNVSSRQL LRHDLIHDIR SVLARSSVAR GSLKIELTES LVMENPEHAA
QMLTRIRELG VGLSIDDFGT GHSSLAYLQR FPFDTLKIDQ SFVRTTARGT RPVILKSIIA
LAHDLGMDVV AEGAESDSDA VELYQLGCEY AQGYVFGEPM DADAAMRLLT EERLEAAS
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