| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5744 |
|---|
| Symbol | |
|---|
| ID | 5155501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 5998366 |
|---|
| End bp | 5999655 |
|---|
| Gene Length | 1290 bp |
|---|
| Protein Length | 429 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 640560480 |
|---|
| Product | putative TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| Protein accession | YP_001241602 |
|---|
| Protein GI | 148257017 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.331978 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 34 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCT TCATTCTGCT TGCCACAATG CTGGCGTGCT TCCTGATCGG GATGCCCATC
GCTTACTCGC TGGCGATGGC CGCAATCGCT GGCGCTCTCT CCGTCGGCAT TCCGCTCGAA
GCGGTGATGC TCAAGATTTC GGATGGAGTG AGCAAGGTCG CGATGCTGAC CATTCCGTTC
TTCGTACTGG CGGGCGCCAT CATGGCGGAG GGCGGCATGG CCAAACGGCT GGTGGCTTTC
GCTGACGTCC TGGTCGGTCT CACTCGCCTG CGCGGCGGTC TATCGATCGT GAATGTGCTG
GCAACGACGT TTCTAAGTGG CATCTCTGAC TCGGCGGTCG CCGATACCTC GGCGATCGGC
TCGGTCATGA TCCCGCAGAT GGAGGCCAAC GGCTATCCGC GCGTGTTCGC AACTAATCTG
ACCATCAGTT CCTCCGTTCA GGCGCTGCTT GTCCCGCCGA GCCACAACGC CGTGCTGTAT
TCCCTGGCGA CCGGCGGCAC GATTTCAATC AGCGCCTTGT TCATGGCCGG TGTATTCCCC
GGCCTGTTGC TCGGCTTTTC GCTCATCATG CTTTGTATCG TGATCGCCTA TCGCGAACGT
CATCCGCAAG GTCAGACGGT CCCAGCCAAG GATGCGGTCA AGATCACCAT CGATGCAGCG
TGGGGCCTCA TTACGCTCGT GATCATTCTC GGCGGGATCC TCGGCGGCAT CTTCACCGCG
ATCGAAGCCG GCGCCGTCGC CTGCATCTGG GCCTTCTTCG TCACGATGTT CATCTACCGC
GACTATCGCT GGCGCGACCT GCCCGCGCTG CTACACCGAA CGTTCCGCAC CGTAGCAATG
ATGATGACCT TGATCGCGTG CGCGTCTGCA GTCGGCTATA TCATGGCGCT GACGCAGATG
CCCGCGAAGA TGACGCAGTT CTTCCTGTCG ATATCGAGCA ACAAATACGT CATCTTGCTG
CTGATCAACG TGCTGTTGCT GCTGCTCGGA ACGCTGGTCG ATATGGCGCC GTCGATCCTT
ATCGCGACGC CGATCCTTCT TCCCGTGATG CAGAATTTTG GCGTCGATCC GGTTCATTTC
GGCATGATCA TGCTGCTGAA TCTGGGCATC GGCCTTTGCC ATCCGCCGGT TGGGGCGATC
CTTTTCGTCG GCTGTGCCGT CGGCAGGGTG TCGATCGAGC AGGTCATGCG CAAGATATGG
CCGTTTTATG CGGTCATGTT CGGCGTGCTG ATGGCGGTAA CGTACATCCC TGAGATCTCG
CTGTGGCTGC CACGACATAT CCTGCGCTGA
|
|---|
| Protein sequence | MDIFILLATM LACFLIGMPI AYSLAMAAIA GALSVGIPLE AVMLKISDGV SKVAMLTIPF
FVLAGAIMAE GGMAKRLVAF ADVLVGLTRL RGGLSIVNVL ATTFLSGISD SAVADTSAIG
SVMIPQMEAN GYPRVFATNL TISSSVQALL VPPSHNAVLY SLATGGTISI SALFMAGVFP
GLLLGFSLIM LCIVIAYRER HPQGQTVPAK DAVKITIDAA WGLITLVIIL GGILGGIFTA
IEAGAVACIW AFFVTMFIYR DYRWRDLPAL LHRTFRTVAM MMTLIACASA VGYIMALTQM
PAKMTQFFLS ISSNKYVILL LINVLLLLLG TLVDMAPSIL IATPILLPVM QNFGVDPVHF
GMIMLLNLGI GLCHPPVGAI LFVGCAVGRV SIEQVMRKIW PFYAVMFGVL MAVTYIPEIS
LWLPRHILR
|
|---|
| |