Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_5548 |
Symbol | |
ID | 5153381 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 5766547 |
End bp | 5768469 |
Gene Length | 1923 bp |
Protein Length | 640 aa |
Translation table | 11 |
GC content | 70% |
IMG OID | 640560291 |
Product | hypothetical protein |
Protein accession | YP_001241413 |
Protein GI | 148256828 |
COG category | |
COG ID | |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 6 |
Plasmid unclonability p-value | 0.199539 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 26 |
Fosmid unclonability p-value | 0.27235 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCTCGCGG CCGGCGTGCT GGCCGGCCTG CTCGCCCCTT TCGCGGCCAC CCAGGCGGCT GCGCAGTTCG GTGCCCCGCC GCTGCAGATC AGCTGGGAGG TGCGCAATCG CTTCCGCCTG TTCCGCGAGG AGCGCGACTT TCTGCTCCAT GCCGAGAGCA CGCGCGATCG CTCGATTCTC GCCGCCGAGC AGGGCCTGGG GGTGCAGAGC GACGGCCGCG GCTGGGCCCG CAACGTCGTC AACCGGCTGT GCATCGACCT GGCCGGCCAC GTCAACGAAC CGTGCACGCG CGACAACGTG AAAGAAAGCT ATCTCACGCC GATCGACCAT CCCGTCACGG TGCGCCTCAC CGGGCCGGTG CCGGTCGGCG CCACCTGCGC CTGGTCGTTC GACGATGGCG ACGGGCCGCA GACATCGACC TTCGACTGCG CCGAGCCGGT CAATTTGCGC GTCCGCTATG GCCGCCAGAC CGTTGCCAGC GTGGATGTGA CCAGCGCCGA AGGCACGCGA CAGGTCTCGA CCGGCATCCA GGTCCGCGAC GTCTTCATCG CCGGTCTCGG CGACAGCATC GCGTCGGGTG AAGGCAATCC CGACCGCCCG ATCGCGCTCG CTGACGAGGG TTTCTGCTTC CGCTCCTATC TCGGCGGGCC GACCGCGCAA TATTATCGGC CGAGCCGCGC CGGCTTCAAA GGTGGCCGCG CCTGTGAGGC GCCGGACACG CTGCAGAACT GGCAGAAGTA CAGTGCGGTG TGGTTCAACG CCGCCTGCCA CCGCTCGCTC TACAGCTACC AGACCCGCAC CGCGCTGGCG CTCGCGGTGC GCTATCCGCA CGTCGCCGTC ACCTATCTGC CGCTCGCCTG CACCGGCGCG ACCATTGCCG ACGGCCTGTT CGGCAGCCAG CGCGCGCGCG AATGCACGCC TGGCCGCTCG GTGACCACCT GCGCCGGCGG CGTCAACGGC CAGATCGGCG AGTTGCGCGA GGCGCTCACC GCGGCCAAGC GCCGCCAGCC GGATCGGCGG CTCGATCTGG TGCTGCTGTC GATCGGCGCC AACGACATCA ACTTCTCCGG CCTCGTCGCC GACGTCATCG TCGACACGCC GACTGAACGC ACTCTCTTCA AGCGCTCAGG CGTCATCGGC TCGGTGGAGG AGTCGCGCAG CGAGCTGGCG CGCGACCTGC CGCAGGGCTT CGCCAAGCTG CGCGAGGCGT TGAAGCCGCT GGTCGGCGAC CTCTCGCACG TCATCTACAC CGCCTACGGC AATCCGGCGC TGAGCGGGCC TGGGGTTCCC TGCCCCGGCG GTCCGGCCGG CTTCGAGGTG CATCCCTCGT TCAATGCCAA TCCGCAGCGG CTCGCCAAGG TCGCGGGGTT CGTCGAGAAC GAGTTCCTGC CGTCGCTGCG CGGGCTTGCG CAATGCACCG CGGGTGTGCT GTGCCGCGAT CCCGGCACCG ATCGCATGAC GTTCGTCGAT GCGCATCAGG CCGCCTTCGC CCAGCACGGC TTCTGCGCGC GCTCGCCCCA GGACCCGCCC TTCGACCGCG AATGCTTCTC GCAGGCCGGC GACAGCTTCG ATCCGAATAT CGTCAGCGCC GCCAATGAAC CGCTGCTGTG CGGTCGCGGC GCCAGCGAGT ATCGTCCCTA TCTGCCGCGC GCACGCTGGA TCCGCGACGC CAATGACAGC TACTTCTCGG CCATGACCTA TCCGCAGGGC CTGCCCGCGG CGATGCAGCC GGCCGACATT CACGATGCGA GCTGGGGCGT GCTGTCGGCG GTCTATGGCG GCGCTGTGCA TCCGAGCGCC GAAGGCCATG CCGCGATGGC AGACGCGGCG TTTCCGGCCG CGGCGGAAGT GCTCGACCTC GATGCCCCGG AGCCCAAGAT TACCAGCCAG CCGCTGCCAC CCGCTGGCGG GGTGCGGCAG TGA
|
Protein sequence | MLAAGVLAGL LAPFAATQAA AQFGAPPLQI SWEVRNRFRL FREERDFLLH AESTRDRSIL AAEQGLGVQS DGRGWARNVV NRLCIDLAGH VNEPCTRDNV KESYLTPIDH PVTVRLTGPV PVGATCAWSF DDGDGPQTST FDCAEPVNLR VRYGRQTVAS VDVTSAEGTR QVSTGIQVRD VFIAGLGDSI ASGEGNPDRP IALADEGFCF RSYLGGPTAQ YYRPSRAGFK GGRACEAPDT LQNWQKYSAV WFNAACHRSL YSYQTRTALA LAVRYPHVAV TYLPLACTGA TIADGLFGSQ RARECTPGRS VTTCAGGVNG QIGELREALT AAKRRQPDRR LDLVLLSIGA NDINFSGLVA DVIVDTPTER TLFKRSGVIG SVEESRSELA RDLPQGFAKL REALKPLVGD LSHVIYTAYG NPALSGPGVP CPGGPAGFEV HPSFNANPQR LAKVAGFVEN EFLPSLRGLA QCTAGVLCRD PGTDRMTFVD AHQAAFAQHG FCARSPQDPP FDRECFSQAG DSFDPNIVSA ANEPLLCGRG ASEYRPYLPR ARWIRDANDS YFSAMTYPQG LPAAMQPADI HDASWGVLSA VYGGAVHPSA EGHAAMADAA FPAAAEVLDL DAPEPKITSQ PLPPAGGVRQ
|
| |