| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5375 |
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| Symbol | |
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| ID | 5150168 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | - |
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| Start bp | 5599130 |
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| End bp | 5600329 |
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| Gene Length | 1200 bp |
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| Protein Length | 399 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 640560132 |
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| Product | HlyD family secretion protein |
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| Protein accession | YP_001241256 |
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| Protein GI | 148256671 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.288749 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 0.0889869 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGTCCTG TGTTGCGCCG TGTCGTCATC GCGTCGATCG CTCTGGCGGT CGCTGCCGCC
GTCGGCTGGA TGGCGATGCC TGGTCCCATT CCGGTGGAGA CGGCTGTGGT GACCAAAGGG
CGGTTCGTCG CGACCGTGGA GGACGACGGC AAGACGCGGG TGCGCCAACG CTATGTCGTG
GCCGCGCCGC TCGCCGGACG GCTGGGCCGT CTCCGCTTCA AGGCCGGCGA TCAGGTCAAG
GCCGACGACG TGGTCGCCAC CATCACGCCG GCGCCGGCAC CCTTGCTCGA TCCGCGCGCC
CGCCGCGAGG TCGAAGAGCG GCTCGGCGCG GCCGAGGCCA ATGTCGAACG CGCCAAGGCG
GTGGTGGCAC GGGCGCAGGC GCAGAGCGCG CAGGCGGCGG CCGATCTCGC GCGCACCATG
GCCCTGGCCG CAAGCGGGGC TGCGACGATT CAGGCGAAGG AGCGCGCCGA GCTCACGATG
CGCGTCGCCG AACGCGACCT GCGCGCCGCC GAATATGTCG ACCACGCCGC CCAGCACGAA
CTCGGACAGC TCCGGGCGAT GCTGGCGCGT TACGGCAGCA ACACCGATGC GGACGTGCCG
GCGGACAGCT GGAACGTGAC GGCGCCGGTC GGCGGGCTGG TGCTGAAGGT GACCCAGGAA
AGCGAGACCA TGGTGCAGCC GGGCACGGCG CTGCTCGATC TCGGCGATCC CCATGATCTC
GAAGTGGTCG TCGACGTGCT GAGCACCGAT GCAGTCGAGA TCGCTCCCGG CGCTGACGTC
ACGATCGACC GTTGGGGCGG CGCGGGCCGC CTGCCGGGGC GGGTTCGCCG CGTCGAGCCG
GCGGCCTTCA CCAAGATCTC CACGCTCGGC GTCGAGGAGC AGCGCGTCAA CGTGCTGATC
GACATCGTCT CGCCGGCCGA CCAATGGCAG CGGCTGGGCG ATGCCTATCA GCTCGATGCG
CAGATCGCCG TCTTCACCCA GGACGATGCG ACCATCGTGC CGACCGGCGC GCTGTTCAAG
CGTGGCGACG ACTGGTCGGT GTTCGTGCTC GAGGACGGCC GCGCCGCGTT GCGCAAGTTG
CGGATCATCC GCCGCTCGGG CCGGTTCGCG GCGGTGGCCG AGGGCGTGTC CAGCGGCGAC
GTCGTGATCA TCTATCCCGG CGACCGGGTG GCGGATGGCG TCAAGGTCGC GCCGCGTTGA
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| Protein sequence | MRPVLRRVVI ASIALAVAAA VGWMAMPGPI PVETAVVTKG RFVATVEDDG KTRVRQRYVV
AAPLAGRLGR LRFKAGDQVK ADDVVATITP APAPLLDPRA RREVEERLGA AEANVERAKA
VVARAQAQSA QAAADLARTM ALAASGAATI QAKERAELTM RVAERDLRAA EYVDHAAQHE
LGQLRAMLAR YGSNTDADVP ADSWNVTAPV GGLVLKVTQE SETMVQPGTA LLDLGDPHDL
EVVVDVLSTD AVEIAPGADV TIDRWGGAGR LPGRVRRVEP AAFTKISTLG VEEQRVNVLI
DIVSPADQWQ RLGDAYQLDA QIAVFTQDDA TIVPTGALFK RGDDWSVFVL EDGRAALRKL
RIIRRSGRFA AVAEGVSSGD VVIIYPGDRV ADGVKVAPR
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