| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5324 |
|---|
| Symbol | livM |
|---|
| ID | 5149347 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 5551815 |
|---|
| End bp | 5553155 |
|---|
| Gene Length | 1341 bp |
|---|
| Protein Length | 446 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640560086 |
|---|
| Product | high-affinity branched-chain amino acid ABC transporter (permease protein) |
|---|
| Protein accession | YP_001241210 |
|---|
| Protein GI | 148256625 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG4177] ABC-type branched-chain amino acid transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.538003 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 0.504195 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGAGCGCGT CCCTTCCAGC CTCTTCGCCC CCCGCCTCGA ATGGCTCCGA ACCGGTCGGA
GCCGGCTTCA TCCTCAAAAA GGCCGTCCTC AGCGCGCTCG TCGCGCTCGG CCTGTTCTCG
CTGATGGTCG GCGTCCGTAC CGAGGCCGGC CAGAGCGGGC AGCTCGAATA TTGGACCCGC
TTCGGCGAGC TCGCGAGCCT GGTCGGCGCT GTCTTCGTCG GCTCGATCGT GGTCGAGCTG
CTGCGGCTGT GGCTCGGCCC GCGCGGCGGC CTCGGCAGTT TTGTGCCCGC CTCCGTGCAG
AGCGGCCTGT CGGTCGCCGG CCGCTACCTC GCCCCGGCGC TGCTGATCTT CACCTTGCTA
GTGCCGGTGA TCTTCTACAA TCAGCGCTAC ATTCTCGACC TCGGCATCCT TGTCCTGACC
TATGTGATGC TGGGCTGGGG CCTCAATGTC GTGGTCGGCC TCGCCGGCCT GCTCGACCTC
GGTTATGTCG CGTTCTACGC GGTCGGTGCC TATTCCTACG GGCTGCTCTC GACCACGTTC
GGCCTGTCGT TCTGGATCTG CCTGCCGCTC GCCGGCATCC TCGCCGCGTT CTGGGGCGTG
CTGCTCGGCT TCCCCGTGCT GCGCCTGCGC GGTGACTATC TGGCGATCGT CACCCTCGCA
TTCGGCGAAA TCATCCGCCT GGTGCTGATC AACTGGCAGG ACGTCACCGG CGGCCCCAAC
GGCATCTCCG GCATTCCGCG CCCGAGCCTG TTCGGCATTC CGCTGACGCC CGGCCCCGAT
GGACTCGCCG CGATGCTCGG CATTCCGTTC TCGCCGACGC ATCGCATCGT GTTCCTGTTC
TATCTGATCC TGGCGCTGGC GCTGCTCACC AACTGGGTCA CGATCCGGCT GCGCCGGCTG
CCGATCGGCC GCGCCTGGGA AGCGCTGCGC GAGGACGAGG TTGCCTGCCG CGCGCTCGGC
ATCAACATCA CCACCACCAA GCTGACGGCG TTCGCCACCG GCGCCATGTT CGGCGGCTTC
GCCGGCGCCT TCTTCGCCAC CCGCCAGGGC TTCATCAGTC CCGAGTCCTT CACCTTCCAG
GAATCGGCGC TGGTGCTCGC GATCGTCGTG CTCGGCGGCA TGGGGTCGCA GCTCGGCGTG
GCGCTGGCGG CGCTCGCCAT GATCGGCGGC TTCGAACTGT TCCGAAGCCT CGAGGTCTAC
CGCATGCTGG TGTTCGGTCT GGCCATGGTG CTGGTGATGA TCTGGCGTCC GCGCGGCATC
GTCGGCCATC GCTCGCCGAC CGTGTTCCTC GAAAAATCCA AGAGCATCTC TTCGGACCTC
GTCAAGGAAG GCCACGGATG A
|
|---|
| Protein sequence | MSASLPASSP PASNGSEPVG AGFILKKAVL SALVALGLFS LMVGVRTEAG QSGQLEYWTR
FGELASLVGA VFVGSIVVEL LRLWLGPRGG LGSFVPASVQ SGLSVAGRYL APALLIFTLL
VPVIFYNQRY ILDLGILVLT YVMLGWGLNV VVGLAGLLDL GYVAFYAVGA YSYGLLSTTF
GLSFWICLPL AGILAAFWGV LLGFPVLRLR GDYLAIVTLA FGEIIRLVLI NWQDVTGGPN
GISGIPRPSL FGIPLTPGPD GLAAMLGIPF SPTHRIVFLF YLILALALLT NWVTIRLRRL
PIGRAWEALR EDEVACRALG INITTTKLTA FATGAMFGGF AGAFFATRQG FISPESFTFQ
ESALVLAIVV LGGMGSQLGV ALAALAMIGG FELFRSLEVY RMLVFGLAMV LVMIWRPRGI
VGHRSPTVFL EKSKSISSDL VKEGHG
|
|---|
| |