| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_5268 |
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| Symbol | |
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| ID | 5151312 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Bradyrhizobium sp. BTAi1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_009485 |
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| Strand | + |
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| Start bp | 5496268 |
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| End bp | 5499504 |
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| Gene Length | 3237 bp |
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| Protein Length | 1078 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 640560036 |
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| Product | putative outer membrane autotransporter barrel |
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| Protein accession | YP_001241160 |
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| Protein GI | 148256575 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4625] Uncharacterized protein with a C-terminal OMP (outer membrane protein) domain |
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| TIGRFAM ID | [TIGR01414] outer membrane autotransporter barrel domain
[TIGR02601] autotransporter-associated beta strand repeat |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 0.362559 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTTGCT TTGCGAGAAC GAACTTTGCT GTGCCGAATT CAAAGCCGCG GCGCTGGCTC
GCGCTCTCTT TCCTCCTTGC AGGCACGTTT CTGAGCACCC AGGCCCTGGC GATCGACGTC
GCCAATCAGG CCGACTGGAA TACGGCAGTG GCGGCGGTCG CAGCCGCAGG CGCCAACTCG
ACCGTGACAA TCAACATCAC CAGCGGCTTC ACCCTGTCCA GCTCGCTTGC GCAACTGCAA
GCCGCCAATA GCAACGTCAC GGTGAACATC ACCGGCAATG GCCAGACGAT CAACGGCGCC
TCCTCGTTTC AGGGCATCGT CGTCAACGGT GCCAATGCGC CGACCGTGAA TATCTCCAGC
CTGTCGATCA CCAACACCGC TGCGATCGGC GGCAACGGCC AGAATGGCCA GAACGGTTAC
TATAGCGGCG GCTTGGCCTA TGGCTCCGGC GGCGGCGGCG GCGGCGGTCT CGGTGCAGGC
GGCGGCCTGC TGGTCGGCAG CGGCGCCAAC GTCACGATTG CCGCGGTGAC CTTTACCAGC
AACAGCGCCA CCGGCGGCCA TGGAGGCAAC GGCGGCAGCG CTCAGAACGC GGCGGCTGAC
CCGGTCAATG GCGGCAATGG TGGCGCGGGC GGCGCCGCCA ACAATGGCGG CGCCAGCGGC
GGCGGCGGCG CGGGCGGCAC CGGCGGACAT GCCGGCGGAC AAGGCACGGC CGGCACCGCG
GGCGCCTCGC TCGGTGACGG CGGCGGCGGC GGCGGCGGCT CCGGCACCAC CAACAGCACC
ACCTACACCA ACAACAATCC CGGCGGCAGC GGCAACGCCA ACGGCGGCAA CGGCGGCAGC
GGCGGCGACG GCGCGACGAA TGCCAGCGGC GCGGGCGGCC CCGGGCCCGG CTCCGACGGC
GGCGCCGGCG GCAATGGCGG CGCCGCCAAT GGCGGCGCCA TCTACGTCGC CACCGGCGGT
ACGCTGACGA TTCTCGATTC GCCGATTTCC GGCAACACCG TCGCCGGTGG CGCCGCCGGC
ACCCCCGGCA TCGGGATCGG GCCAAGCGCC ATCAATGGAT TTTCAGCAGC GGCAGGCGCA
GCGCAGGGCG CCGGCATCTT CCTGAGCGGC GTGACGGCCA ATATCGGCGT GTCCGGCGGC
AGCGTGACCT ATGGCGACTC CATCGGCGGC ACCGGACTGA CGACCGGCGG CGTCAACACC
GCCATCAACA AGACCGGCGC CGGCACCTTG GTGCTGTCAG CGACCAACAC CTTCACCGGC
AACGTCAACA TCAGCGCAGG CACTGTTTCG ATCGGCGCCA CCGCGAACCT CGGCAACGTT
GCCAATGACG TGATCATTTC CAATGGCGGC ACGCTAGCGG TCACTGGCAC GACCACCCTC
GCCAATGGTC GCGACTTCAA GATTGCCGGC CTGTCGACGA TCGATGTGAC CTCAGCGACC
ACGACCACGC TGCAAGGCAT TGTCTCCAAC GGCGCTTCCG CCGGCACCTT GGTAAAAGCG
GGCGGCGGCA TCCTGCTGCT GTCGGGCACC AACACCTACA CCGGCGAGAC CAACGTCATC
GGCGGTACGC TGCGCGCGGG TACGGCGAAC GCATTCGGCG CCAGCACCGT CTTCAGCGTG
CTGTCCGGCG GCACGCTGGA TCTCAACGGT TTCAACAAGA CCTTCGGCAC GCTGAGCGGC
GACGGCGCCG TGACCGGCGC CAATGTGACG ATCGCCGGCA CTTTCACGCC CGGCAATGGC
AACCCGGCCT CGTCCATGGC AATCACCGGA AACCTCGCAT TCCAGTCGGG TGCGGTCTAT
CTGGTGCAGC TCAACCCGAC GACCGCCTCA CTTGCCCAGA TCACCGGCAC CGCCAATCTT
ACCGGCGCTG CGGTCACTGC GAACTACGCC AACGGCACCT ACATCTCCAA GAAGTACACC
ATTCTCACCG CGACCGGCGG CGTCAGCGGC ACCTTCAGCG GCGTGACCAA CACCAACCTG
CCGGCAGGCT TCTCCTCCAC GCTGAGCTAT GACAGCAACA ATGCGTTCAT CGACCTCACG
ATGAACACGG CGTCGGGCAG CATCAACCAG CAGAACGTCA GCAACGCGCT CACCAACTAT
TTCAACAGGA ACGGCAGCAT TCCGGTCGTA TTCACCGGCT TGACTCCGAC GGGGCTGACA
CAGATCTCGG GCGAGACCTC GACCGGCTCG CAGCAGACGA CCTTTACTGC GATGACCCAG
TTCATGGGCA TCATGACCGA TCCGTTCCTC GGCGGCCGCG GCGACCAGGG CTCTGCGCCC
GCCGGCGCGA TCGGCTATGC CGAAGAAGCG CTCGCTTATG CGACCAAGCG CAATCCGAAC
GACGCCCTGG CGGCGATCTA TACCAAGGCG CCGGCCGCGC CGGTGGCAAG GCCGAACTGG
AGCGTGTGGG CGGCCGGCTT CGGCGGCTCG CAGAGCACCG ACGGCAACAC CGCGCTCGGC
TCCAACAACA CGACCAGCAA CATCTACGGC ACGGCCGTCG GCGCCGACTA TCGCTTCTCG
CCTTTCACGA TCGCCGGCTT TTCGCTGGCG GGCGGCGGCA CCACATTCAA CGTCGCCAAT
GGCGGCAGCG GGCGCTCCGA CCTGTTCCAG GCCGGCGCCT TCGTCAGGCA CATGATCGGC
GCAGGCTATG TTTCGGGGGC ACTGGCCTAT GGATGGCAGA ACGTCACCAC CAACCGCACG
GTGACGGTGG CTGGCGTCGA TCAGTTGCGA GCCAATTTTG ATGCCAACAC CTTCGCCGGC
CGGCTCGAAG GCGGCTATCG CTTCATCTCG CCATGGATGG GGTTCGGCAT CACGCCCTAC
GCCGCCGCGC AGTTCACCAC CTTCAACCTG CCGGGCTATG CCGAGAGCGC GGTCGCCGGC
GCCAACACTT TCGCGCTCCG TTTCGGATCG CAGAGCTTGA CCGATACGAG GTCGGAGCTG
GGTGTTCGCA CCGACAAGGC CTATGCGCTG ACGGACGGCG TGTTCACGCT GCGCAGCCGC
TTCGCCTGGG CCTATGACTT CAATCCCAGC CGTTCGGTCG GAGCCACGTT CCAGACACTC
CCCGGCGCAT CCTTCGTCGT CAACGGCGCG CGGCTGGCGC AGAACTCGGC GCTGACGACG
GTCGCCGCGG AAATGAAGTG GAGAAACGGC TGGTCAGCCG CAGCAAGCTT CGAAGGCGAG
TTCTCGGACG TGACCCGCAG CTACGCCGGC AAGGGCGTCG TGCGCTACGC ATGGTGA
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| Protein sequence | MTCFARTNFA VPNSKPRRWL ALSFLLAGTF LSTQALAIDV ANQADWNTAV AAVAAAGANS
TVTINITSGF TLSSSLAQLQ AANSNVTVNI TGNGQTINGA SSFQGIVVNG ANAPTVNISS
LSITNTAAIG GNGQNGQNGY YSGGLAYGSG GGGGGGLGAG GGLLVGSGAN VTIAAVTFTS
NSATGGHGGN GGSAQNAAAD PVNGGNGGAG GAANNGGASG GGGAGGTGGH AGGQGTAGTA
GASLGDGGGG GGGSGTTNST TYTNNNPGGS GNANGGNGGS GGDGATNASG AGGPGPGSDG
GAGGNGGAAN GGAIYVATGG TLTILDSPIS GNTVAGGAAG TPGIGIGPSA INGFSAAAGA
AQGAGIFLSG VTANIGVSGG SVTYGDSIGG TGLTTGGVNT AINKTGAGTL VLSATNTFTG
NVNISAGTVS IGATANLGNV ANDVIISNGG TLAVTGTTTL ANGRDFKIAG LSTIDVTSAT
TTTLQGIVSN GASAGTLVKA GGGILLLSGT NTYTGETNVI GGTLRAGTAN AFGASTVFSV
LSGGTLDLNG FNKTFGTLSG DGAVTGANVT IAGTFTPGNG NPASSMAITG NLAFQSGAVY
LVQLNPTTAS LAQITGTANL TGAAVTANYA NGTYISKKYT ILTATGGVSG TFSGVTNTNL
PAGFSSTLSY DSNNAFIDLT MNTASGSINQ QNVSNALTNY FNRNGSIPVV FTGLTPTGLT
QISGETSTGS QQTTFTAMTQ FMGIMTDPFL GGRGDQGSAP AGAIGYAEEA LAYATKRNPN
DALAAIYTKA PAAPVARPNW SVWAAGFGGS QSTDGNTALG SNNTTSNIYG TAVGADYRFS
PFTIAGFSLA GGGTTFNVAN GGSGRSDLFQ AGAFVRHMIG AGYVSGALAY GWQNVTTNRT
VTVAGVDQLR ANFDANTFAG RLEGGYRFIS PWMGFGITPY AAAQFTTFNL PGYAESAVAG
ANTFALRFGS QSLTDTRSEL GVRTDKAYAL TDGVFTLRSR FAWAYDFNPS RSVGATFQTL
PGASFVVNGA RLAQNSALTT VAAEMKWRNG WSAAASFEGE FSDVTRSYAG KGVVRYAW
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