| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4914 |
|---|
| Symbol | degP |
|---|
| ID | 5156174 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 5155929 |
|---|
| End bp | 5157053 |
|---|
| Gene Length | 1125 bp |
|---|
| Protein Length | 374 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 640559712 |
|---|
| Product | serine protease |
|---|
| Protein accession | YP_001240842 |
|---|
| Protein GI | 148256257 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 0.471766 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCCGAT GGAGCTTTGC CGCGCGCCTG TTGGCGGTCG CGGCGACGGC GCTGCTGCTC
ATGATGGCGT GGCAGACTTT CCCGCTGATC CAGGCGGAGA TCCTGGGCCT GCGCGCCAAG
CCCCGCGAGA TCACGGCGCG CGGCGACCTC GCCGCCGACG AAAAGAGCAC GATTGCGCTG
TTCGAAAGCC GCAGCGGCTC GGTGGTCTTC ATCACGACCG TTCAACAATC AGTCAATGCC
TGGACAGGCG ATGCGCAGCA GGAGCGCTCC GGCACCGGCT CCGGCTTCGT CTGGGACGAT
CTTGGCCATG TCGTCACCAA TTATCACGTC ATCGAGGGCG CGACTGAAGC ACTGGTCAGC
CTGACCGATG GCCGCTCGTT CCGCGCGGCC CTGGTCGGCG CCAACCCGGA GAACGATCTC
GCGGTGCTGC TGATCGGCGT CGGCACCGAC CGGCCGAAGC CGTTGCCGAT CGGGACCAGC
GCCGATCTCA AAGTGGGGCA GAAAGTGTTC GCGATCGGCA ATCCGTTCGG CCTCAGCAGT
ACGCTGACCA CGGGCATCGT CTCGGCGCTC AACCGCAACC TGCAGGTCAC GCAGGAGCGC
ACCCTCAACG GCTTGATCCA GACCGATGCC GCGATCAATC CCGGCAATTC CGGCGGGCCG
CTGCTCGACA GCGCCGGACG GCTGATCGGG GTCAATACCG CGATCTACAG CCCGTCCGGG
GCGTCGGCCG GGATCGGCTT CGCCGTGCCG GTCGACAAGG TCAACCGCAT CGTGCCGCGG
CTGATCGCGA GCGGCCGCTA TGTCAGCCCG AGTCTCGGGA TCCGGACCGA TCCAAAAGCC
AATGAGGCGC TGTCGGCCCG CCTCAATATG TCGGGCGTGT TCGTGCTCGA TGTCGAGCCG
GATTCGGCGG CGGAGAAGGC GGGGCTGATC CCGGCGCGCC TGACCCGCGA CGGCGGCTTC
GCGCTTGGCG ACGTGCTGCT GGCCATCGAC GGACAGGTGG TGGATTCGCC CGACGACATG
ACACGGGCGT TGGAGACCAA GACTCCCGGC GACCGCGTCG TGCTGCGGGT CAGGCGCGCC
GGCAAGACGA TCGAGGTCCG GGTGACGCTC GACGTCGCGC GGTGA
|
|---|
| Protein sequence | MSRWSFAARL LAVAATALLL MMAWQTFPLI QAEILGLRAK PREITARGDL AADEKSTIAL
FESRSGSVVF ITTVQQSVNA WTGDAQQERS GTGSGFVWDD LGHVVTNYHV IEGATEALVS
LTDGRSFRAA LVGANPENDL AVLLIGVGTD RPKPLPIGTS ADLKVGQKVF AIGNPFGLSS
TLTTGIVSAL NRNLQVTQER TLNGLIQTDA AINPGNSGGP LLDSAGRLIG VNTAIYSPSG
ASAGIGFAVP VDKVNRIVPR LIASGRYVSP SLGIRTDPKA NEALSARLNM SGVFVLDVEP
DSAAEKAGLI PARLTRDGGF ALGDVLLAID GQVVDSPDDM TRALETKTPG DRVVLRVRRA
GKTIEVRVTL DVAR
|
|---|
| |