| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4410 |
|---|
| Symbol | pcm |
|---|
| ID | 5155390 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 4623527 |
|---|
| End bp | 4624174 |
|---|
| Gene Length | 648 bp |
|---|
| Protein Length | 215 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640559218 |
|---|
| Product | protein-L-isoaspartate O-methyltransferase |
|---|
| Protein accession | YP_001240355 |
|---|
| Protein GI | 148255770 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG2518] Protein-L-isoaspartate carboxylmethyltransferase |
|---|
| TIGRFAM ID | [TIGR00080] protein-L-isoaspartate(D-aspartate) O-methyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.217608 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTCCGA CTGCCCCGCC CGAGAAGATG ATGTTCCAGC TGACGCTGCG TCGGCGGGGA
ATTAGCGACC AGGCGGTCCT GCGCACGATG GAGGAGGTGC CGCGGGAGGA GTTCGTTCTG
CCGGCCGATC GGGCCGAGGC CTATCGCGAT AGCGCGATGG CGATCGCCTG CGGACAGACC
ATCAGCCAGC CTTTCGTCGT CGCCTACATG ACCGAGCAGC TGAAGCTGCA GAAGAATCAC
CGCGTGCTCG AGATCGGCAC CGGGTCGGGA TACCAGGCGG CGATCTTGTC GCGTCTGTGC
GCCAACGTCC TGACGGTGGA GCGATTCCGC ACGTTGGCCG ACAAGGCGCG GGAGCGGCTG
GAGAAGCTCA ACTGCTTCAA TGTCGAGGTC ATGCTGGGCG ACGGTTATGC GCTGCCCCCA
GGGGCCGGCC AATTCGACCG TATCATCGTC ACCGCGGCGA TGGACCAGAT TCCACAGAGC
CTGCTCGACC GGCTGGAGCC GGACGGTATC CTGATCGCGC CAGTGGGACC GCAGCACGGG
GTGCAGACGC TGGTGCGGGT CACGCGGACG GGCGATCATT TCGACCGGAA AGAGCTCGTC
GACGTGCGAT TTGTGCCGGC TATTCCGGGG ATTGCACGCG AACTTTGA
|
|---|
| Protein sequence | MPPTAPPEKM MFQLTLRRRG ISDQAVLRTM EEVPREEFVL PADRAEAYRD SAMAIACGQT
ISQPFVVAYM TEQLKLQKNH RVLEIGTGSG YQAAILSRLC ANVLTVERFR TLADKARERL
EKLNCFNVEV MLGDGYALPP GAGQFDRIIV TAAMDQIPQS LLDRLEPDGI LIAPVGPQHG
VQTLVRVTRT GDHFDRKELV DVRFVPAIPG IAREL
|
|---|
| |