| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_4330 |
|---|
| Symbol | |
|---|
| ID | 5151597 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 4536803 |
|---|
| End bp | 4538425 |
|---|
| Gene Length | 1623 bp |
|---|
| Protein Length | 540 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640559145 |
|---|
| Product | putative ABC transporter, ATP-binding protein |
|---|
| Protein accession | YP_001240282 |
|---|
| Protein GI | 148255697 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1123] ATPase components of various ABC-type transport systems, contain duplicated ATPase |
|---|
| TIGRFAM ID | [TIGR02323] phosphonate C-P lyase system protein PhnK |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 33 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCTCAA CGGGCCCCAT TCTCACGGTC GACCGCCTCA GCGTTCGTCT CCCCAAGGGC
GCCGACCGCA GCCATGCGAT CACCGAGGTG TCGCTGTCGG TCGCCGAAAA CGAGATCGTC
TGCATCGTCG GCGAGTCCGG CTCCGGCAAG TCGATGATGG CCAATGCGAT CATGCGCCTG
CTGCCGCAGG GCGTCACCAC CGACCATGGG CGCATCCTGT TCGTCGGTCG TGATCTTTGC
GCCGCATCGG CCGCCGAGAT GCGCAGCATC CGTGGCGCCG AGATCGCGAT GGTGTTCCAG
GAGCCGATGA CGGCGCTGAA TCCGCTGCGC ACGATCGGCG ATCAGATCGG CGAAGTGCTC
GACATCCACA CCGGTCTCGC GAAGGCCGAG ATCCGGTCGC GCGTGCTTTC GCTGCTGAGC
GACGTCCACA TCCCGGATCC GCCGCGGGCT GCCAAGGCCT ATCCGCATGA GCTGTCCGGC
GGCCAGCGGC AGCGCGCAAT GATCGCGATG GCGCTCGCGC TCGATCCGAA GCTGCTGATC
GCGGACGAAC CGACCACAGC GCTCGATGTC ACGACGCAGG CGCAGATCCT CAAGCTCATT
CGCGAGCTGC AACAGCGTCG CAACACCGCG GTGCTCTTCA TCACCCACGA TTTCGGCGTC
GTCGCCGAAA TCGCCGACCG GGTGGTCGTC ATGCAGCATG GCGTGGTGGT GGAGCACGGG
ACGGCGCGCG AGGTGCTCCG CAACCCGCGA CATGCCTATA CGCAGCAGCT GATCGCCGCG
GTGCCGCCCG TCGCCGCGCC GCCGCCGCGC CGACTGTCGG ACCAGACGCT TCTCGCGCTG
TCGGGCGTGG TCAAGACCTA TCGCGCCGGC GGCTTTCTCG GCCGTGGCGC GCGCGTGACC
CATGCGGTCA AGGATGTCTC GTTCACCTTG CCCAAGGGCG CGACGCTCGG CATCGTCGGC
GAGTCCGGCT CGGGCAAATC GACCCTCGCC CGCTGCATCA TCCGGCTGAT CGATCCCGAT
GCGGGATCGA TCCTGCTCGA CGGCCACGAC TGGGCGCTGA TGTCACGCCG CGAGATCCGG
CAGCGGACGC AGCAGATGCA GATGGTGTTC CAGGATCCGT TCGCCTCGCT GAACCCGCGT
CGCAAGGCGA TCGACTTGGT GGCTCAAGGG CCGATCGTGC ATGGCACACC GCGCGACAAG
GCGCTCAGCG AGGCGCGTGA GCTGTTCCAG CTCGTCGGGC TCGATCCGTC TGCGGCGGAT
CGCCTTCCGC ACGAATTCTC CGGCGGCCAA CGCCAGCGCA TCGGGCTTGC GCGCGCGCTC
GCGCTGAAGC CCGACGTGCT GGTTGCCGAC GAGCCGGTGT CTGCGCTCGA CGTCTCCGTG
CAGGCGCAGG TCCTGAGGCT TCTCACCAGC TTGCGCGAGC GGCTCGGCCT GTCCATCATC
TTCATCACGC ATGATCTGCG GGTCGCGGCG CAGATCTGCG ACCTCGTCGC GGTCATGAAG
GACGGCGTGG TCGTCGAACA CGGCCTCACC CATCAGGTGT TCGGCACGCC GCAGCATGCC
TATACGCGGG CGCTGCTCGA CGCCATACCG GGCGGCGACT TCGCCCGGAC ACCGCATCCG
TGA
|
|---|
| Protein sequence | MSSTGPILTV DRLSVRLPKG ADRSHAITEV SLSVAENEIV CIVGESGSGK SMMANAIMRL
LPQGVTTDHG RILFVGRDLC AASAAEMRSI RGAEIAMVFQ EPMTALNPLR TIGDQIGEVL
DIHTGLAKAE IRSRVLSLLS DVHIPDPPRA AKAYPHELSG GQRQRAMIAM ALALDPKLLI
ADEPTTALDV TTQAQILKLI RELQQRRNTA VLFITHDFGV VAEIADRVVV MQHGVVVEHG
TAREVLRNPR HAYTQQLIAA VPPVAAPPPR RLSDQTLLAL SGVVKTYRAG GFLGRGARVT
HAVKDVSFTL PKGATLGIVG ESGSGKSTLA RCIIRLIDPD AGSILLDGHD WALMSRREIR
QRTQQMQMVF QDPFASLNPR RKAIDLVAQG PIVHGTPRDK ALSEARELFQ LVGLDPSAAD
RLPHEFSGGQ RQRIGLARAL ALKPDVLVAD EPVSALDVSV QAQVLRLLTS LRERLGLSII
FITHDLRVAA QICDLVAVMK DGVVVEHGLT HQVFGTPQHA YTRALLDAIP GGDFARTPHP
|
|---|
| |