Gene BBta_3985 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_3985 
Symbol 
ID5152205 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp4192995 
End bp4194254 
Gene Length1260 bp 
Protein Length419 aa 
Translation table11 
GC content63% 
IMG OID640558819 
Productputative ABC sugar transporter (substrate binding protein) 
Protein accessionYP_001239960 
Protein GI148255375 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1653] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACTGC TCGCGAAGCT GGGACTCGCC GCTGCCGCAT GCCTGATCGG GGCCAACGCC 
GCGAACGCCG ACACCACCGT CAAATGGCTG CACATCGAGG TCAATCCGGC GCAGGTCAAG
ATCTGGGACG AGGTGGCCCG CGCCTATGAG GCGTCGCATC CGGGCGTGAA GATCGAGATG
CAGTTCTTGG AGAACGAGGC CTACAAGGCC AAGCTGCCGA CCATTCTGCA ATCAAAGGAC
CGGCCGAACA TCATCTACAG CTGGGCCGGC GGCGTACTGA AGGCGCAGAT CGAGGCGGGC
GTCCTCGACG ACATCACCGA TCAGGTGAAG GGCTACAGCG ATAGCCTGAC GCCTGCGGCA
CTTGCGGCAT TCACCGACGA TGGCCGCATC TACGGTCTGC CGATCGCGCT GTCGCAGGTC
GGTTTCCTCT GCAACAAGGA GCTGATGGCC AAGGCCAAGA TCGATCCGGC CGCCATCAAG
AGCTGGGACG ATCTGCTTGG CGCCGTGAAG ACGCTGAAGG CCGCGGGCGT GACCCCGATC
GTGGTCGGCG GCGCAGACAA ATGGCCGCTG CACTTCTACT GGACGCACCT TGCGGTTCGC
ATCGGTGGCA AAGCGGCATT CGATGCGGCG CTGCGCGGCG AGAATGGCGG CTTTGCCGGA
GAGACCTTCG TCAAATCCGG CGAGCTGTTC AAGCAGCTCG TCGATCTGCA GCCGTTCCAG
AACGGCTTTC TCGGCTTCAA GAACCCCCAG GCCGTTGGCT ATTTCGGCGA CGGCAAGGCG
GCGATGACCC TTGCCATCAG CTCCGCCTAT CATCTGCAGC GGGCGCTCGC AGCCGACAAG
ATCGGCTTGA GCGAGGATAA GCTCTGCTGG TTCGATTTCC CGGCCGTGGC CGGCGGCAAG
GGGGCTCCGA CCGATACGCT CGGCGGCATC ACCGGCTGGC TCGTCACCAA GGGCTCGCCG
AAGGAAGCAG TCGATTTCCT GAAGTATTTC ATTTCGAAGG ACGTGCAGAC GCGGTTGGCG
GCCGGGAATT TCATCGTCCC AGTCGTGCAG GGCGCCGACG CCGGCCTCAA CAATGGCTTC
ATGAAGCTGA TCGCGGCCAA CCTGGCGAAG TCGAACTATC ATCAGAACTT CTATGACCAG
AGCCTTGGCC CCTCGGTCGG CCGCGTCGTC AACGATGTCT CGGCGGAGAT CGCGGGCGGC
AGCATGAGTC CGCAGGACGC AGCCAAGGCG ATTGAAGCGG CCCGCAAACA GGGCAACTGA
 
Protein sequence
MRLLAKLGLA AAACLIGANA ANADTTVKWL HIEVNPAQVK IWDEVARAYE ASHPGVKIEM 
QFLENEAYKA KLPTILQSKD RPNIIYSWAG GVLKAQIEAG VLDDITDQVK GYSDSLTPAA
LAAFTDDGRI YGLPIALSQV GFLCNKELMA KAKIDPAAIK SWDDLLGAVK TLKAAGVTPI
VVGGADKWPL HFYWTHLAVR IGGKAAFDAA LRGENGGFAG ETFVKSGELF KQLVDLQPFQ
NGFLGFKNPQ AVGYFGDGKA AMTLAISSAY HLQRALAADK IGLSEDKLCW FDFPAVAGGK
GAPTDTLGGI TGWLVTKGSP KEAVDFLKYF ISKDVQTRLA AGNFIVPVVQ GADAGLNNGF
MKLIAANLAK SNYHQNFYDQ SLGPSVGRVV NDVSAEIAGG SMSPQDAAKA IEAARKQGN