Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_3540 |
Symbol | |
ID | 5151469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 3697571 |
End bp | 3699988 |
Gene Length | 2418 bp |
Protein Length | 805 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640558393 |
Product | putative outer membrane TonB-dependent receptor |
Protein accession | YP_001239539 |
Protein GI | 148254954 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG4774] Outer membrane receptor for monomeric catechols |
TIGRFAM ID | [TIGR01783] TonB-dependent siderophore receptor |
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Plasmid Coverage information |
Num covering plasmid clones | 3 |
Plasmid unclonability p-value | 0.0614736 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 41 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGACAGG TGAGAGCACC GCGTTCGCTG CGGGCAGGCG CAGCGTTGAA GTTCATTGAC GGACGGGGAG AGGGGCCGTT CGTCACCAAA GTATCGGCCG TCGCTGGATT GATGGCGGTG GCGTCGGTGT CGTCGGCCGA GGCGCAGCCC GCATCCGATC TGCCGCCGGT CAATGTCGAT GCGCCGATCG CGCGCGCCAA GCCGACCGCC TCCAAGCCGA CCGCCGAGCA GGTCCGCGCG CGCAATGCCC TGCGCCGCGC GGCGCGTCAG CAGGGCGCGC AGCAGGCGGC CGTGGCGTTC CCGAACGCCG GCGGGCTCGC CGCGCCCGAT GCCAACCCCT ATGCGGACGC GGCCGAGCCC TACAAGGTCA ACCGCGTCCA GGCGTCGGGC AAGTTTCCCG AACCGCTCCT CAACACGCCG AAGACCATCA CGGTGATGAG CAAGGAAGTT CTGCAGGACA AGCACGTTAC CGCGCTGAAG GAGATCGGCC GTTCGACGGC CGGCGTCACG CTCGGCTCGG GCGAGGGCGG CAACGCATTC GGCGACCGCT TCTTCATCCG TGGTTTCGAT GCCCGCAATG ACGTCTTCAT CGACGGCATC CGCGATCCCG CAGTGTCGAT CCGCGAGAAC TTCTTCACCG AGCAGATCGA GATCCTGCGC GGCCCGGCCT CGTCCTATGC CGGACGCGGC ACCGCCGGCG GCGCCATCAA CATCGTCACC AAGCAGGCCG GCGACACCAA CTTCAAGCGG ATGGATACCG AGTTCGGCAC CGACCAGCAG AAGCGGGTGA CGCTGGATGT CAACCAGACG ATCTCGCCGA CCTTCTCGGT GCGCACCGGC GGGCTGTTCC AGGACTCCAA CGTCGCGGGC CGCAACTACG TCACCGATGA TCGCTGGGGC GCCTTCCTCT CGACCAAGTG GACCCCGATC GACGATCTCA AGATCACGAC GAACTACGTC CACACCGATC TTTCCGGTTA TCCCGATTTC GGCGTGCCCT ATTACAAGCA GGGCAATGTG CCGGTGACCT CGGCCGGCAT TCCGCGCGGT ACATGGTACG GCTTCCTCAA CCGCGACTTC CAGACGGCCC GGCAGGATTT CGGCACGGCC GCGGCTGAGT ACAAGGTCAA CGAGGCGATC ACTCTCACGA GCAAGTTCCG CGGCGAGCAC TCGCTGCTCA ACTATATCGG TACGCTGCCA CAGAACCCGA ACACGACCAG CCCGAACCCG CTGCTCTGGA CGACGACGGC GAGCGCGCAG AGCCGCTATC AGACCGTCGA CGTCTGGGCC AACCAGAACG ACGCGACGTT CAAGCTCGAT ACCGGCGGCA TCAAGCACAC CGCGGTGCTC GGCACCGAGT TCTCCAACGA GAACATCTCG ATTGATCGCT ACACCGGCCT GTCGTCCGAA TTGTTCGGCG GCGGCTCGAC CAGCACGGGT GCGGTCACCG GCGTCAACGT CTATTCGCCG CAGTACACCA ACATCCCGTT CAGCATCACG CCGTCGCTGG TCGGCAATCC CACCCGGTAC GGGGTCAACA CCAACAGTGT CTATGTGATG GACACGGCGA ACTGGCGGGA CACGCTCATC CTGAACGGCG GCGTACGCTA TGACGGCTAC AACATGAGCT CGTCGACCAA TTCGCCGAAA TACCTCAAGA TGAATGCCGA TCTGGTCAAC TACAATGTCG GCCTGGTCTA CAAGCCGATG CCGATCGGCA GCCTCTATGC GGCCTATGCG ACCTCGGCCA ATCCGTTCGG CTCCGAGCTC GACGCCACCG GCACCGATTA TGGCGGTGTG CCGGCCAATA CCGCGATCCT GCTCGGGCCG GAGCGCAACA AGGCGGCCGA GCTCGGCACC AAATGGGAGC TCGTCGATCG TCATCTGCTG GTCTCGGCGG CGCTGTTCCA GACCACCAAG GACAATGCCC GCGAGACCGT CAACGGCCTG CTCACCTCGG GCGCGGCCTA CCGCATCCAG GGCATCGACA TCGAGGCGGA AGGCAAGCTT ACCGACCGCT GGAGCATCTT CGGCGGCCTG GTGCTGATGC AGTCGAAGGT CACGCAGAGC GGCGTCGCCT CGAATATCGG CCTGCAACTC GCCAACATCG CGCACCAGTC CTTCAGCATG CTATCGAAAT ACAAGCTCGA CAGCGGCTGG GAGATCGGCG GCCAGGCGGT CTACCGCTCC AAGGTCTATG GCGGCACCTT CGCGGCCAAC ACCGGCAACG AGCTGCCGAG CTACTGGCGC TTCGACGCCT TCGTCGAGAA GCAGATCGAC AAGAACTGGA CGATGAAGCT CTACGCGCAG AACCTGACCA ACAAGCTGTA TTACGACACG CTGTATCGGA GCGCGGTGCC GTTCGTCGCC GTCGCGCCGG GCCGCGCCTT CTACATCATC ACGACTGCGA AGTTCTGA
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Protein sequence | MGQVRAPRSL RAGAALKFID GRGEGPFVTK VSAVAGLMAV ASVSSAEAQP ASDLPPVNVD APIARAKPTA SKPTAEQVRA RNALRRAARQ QGAQQAAVAF PNAGGLAAPD ANPYADAAEP YKVNRVQASG KFPEPLLNTP KTITVMSKEV LQDKHVTALK EIGRSTAGVT LGSGEGGNAF GDRFFIRGFD ARNDVFIDGI RDPAVSIREN FFTEQIEILR GPASSYAGRG TAGGAINIVT KQAGDTNFKR MDTEFGTDQQ KRVTLDVNQT ISPTFSVRTG GLFQDSNVAG RNYVTDDRWG AFLSTKWTPI DDLKITTNYV HTDLSGYPDF GVPYYKQGNV PVTSAGIPRG TWYGFLNRDF QTARQDFGTA AAEYKVNEAI TLTSKFRGEH SLLNYIGTLP QNPNTTSPNP LLWTTTASAQ SRYQTVDVWA NQNDATFKLD TGGIKHTAVL GTEFSNENIS IDRYTGLSSE LFGGGSTSTG AVTGVNVYSP QYTNIPFSIT PSLVGNPTRY GVNTNSVYVM DTANWRDTLI LNGGVRYDGY NMSSSTNSPK YLKMNADLVN YNVGLVYKPM PIGSLYAAYA TSANPFGSEL DATGTDYGGV PANTAILLGP ERNKAAELGT KWELVDRHLL VSAALFQTTK DNARETVNGL LTSGAAYRIQ GIDIEAEGKL TDRWSIFGGL VLMQSKVTQS GVASNIGLQL ANIAHQSFSM LSKYKLDSGW EIGGQAVYRS KVYGGTFAAN TGNELPSYWR FDAFVEKQID KNWTMKLYAQ NLTNKLYYDT LYRSAVPFVA VAPGRAFYII TTAKF
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