| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2451 |
|---|
| Symbol | gcdH |
|---|
| ID | 5151780 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2539025 |
|---|
| End bp | 2540239 |
|---|
| Gene Length | 1215 bp |
|---|
| Protein Length | 404 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640557369 |
|---|
| Product | glutaryl-CoA dehydrogenase |
|---|
| Protein accession | YP_001238524 |
|---|
| Protein GI | 148253939 |
|---|
| COG category | [I] Lipid transport and metabolism |
|---|
| COG ID | [COG1960] Acyl-CoA dehydrogenases |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 37 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGCGCGC GCCCTCAGGC AAAGGACAAG CCGGCCCAGT CGAGCTTCCA GTGGGACGAT
CCCTTCCTGC TGGATGATCA GCTGACCGAA GACGAGCGCA TGGTGCGTGA CACCGCGCGC
GCCTATGCCC AGGACAAGCT GCTGCCGCGC GTGACCAAGG CCTATCTCGA GGAGAAGACC
GATCGCGAGA TCTTCAACGA GATGGGCGAG CTCGGCCTGA TCGGCATCAC CCTGCCGGAG
GAATATGGCT GCGCCAATGC GAGCTACGTC GCCTATGGCC TCGTGGCGCG CGAGATCGAG
CGCGTCGATT CCGGCTATCG CTCGATGAAC TCGGTGCAGT CGTCGCTGGT GATGTATCCG
ATCTATGCCT ATGGCGACGA AAACCAGCGC AAGAAGTACC TGCCGAAGCT CGCCAGCGGC
GAATGGGTCG GCTGCTTCGG CCTCACCGAG CCGGATGCCG GCTCCGATCC GGCCGGCATG
AAGACGCGCG CTGAGAAGGT CGCCGACGGC TATCGCCTGA CCGGCAGCAA GATGTGGATC
TCGAATGCGC CGATCGCCGA CGTGTTCGTG GTGTGGGCGA AGTCCGCCGC GCATGACAAC
CAGATCCGCG GCTTCATCCT CGAGAAGGGC ATGAAGGGCC TGTCGGCGCC GAAGATCGGC
GGCAAGCTGT CCTTGCGCGC CTCGATCACC GGCGAGGTGG TGATGGATGG TGTGGTGGTG
CCGGAAGAGG CGCTGCTGCC CAACGTCTCC GGCCTGAAGG GCCCGTTCGG CTGCCTCAAC
CGCGCCCGCT ACGGCATCTC CTGGGGCGTG CTCGGTGCCG CCGAGGACTG CATGCATCGC
GCCCGCCAGT ACACGCTCGA TCGCAAGCAA TTCGGTAAGC CGCTCGCCGC GACGCAGCTC
GTCCAGAAGA AGCTCGCCGA CATGGAGACC GAGATCGCGC TCGGCCTGCA GGCGAGCTTG
CGCGTCGGCC GCCTGATGGA CGAGGGCAAG ATGGCGCCGG AGATGATCTC GATCGTCAAG
CGCAACAATT GCGGCAAGGC GCTCGATATC GCCCGCGTCG CCCGCGACAT GCATGGCGGC
AACGGCATCC AGATCGAGTA TCAGGTGATG CGCCACGCCG CGAACCTCGA GACGGTCAAC
ACCTATGAGG GCACGCACGA CGTCCACGCG CTGATCCTCG GCCGCGCCAT CACCGGCATT
CAGGCGTTTT TCTAG
|
|---|
| Protein sequence | MSARPQAKDK PAQSSFQWDD PFLLDDQLTE DERMVRDTAR AYAQDKLLPR VTKAYLEEKT
DREIFNEMGE LGLIGITLPE EYGCANASYV AYGLVAREIE RVDSGYRSMN SVQSSLVMYP
IYAYGDENQR KKYLPKLASG EWVGCFGLTE PDAGSDPAGM KTRAEKVADG YRLTGSKMWI
SNAPIADVFV VWAKSAAHDN QIRGFILEKG MKGLSAPKIG GKLSLRASIT GEVVMDGVVV
PEEALLPNVS GLKGPFGCLN RARYGISWGV LGAAEDCMHR ARQYTLDRKQ FGKPLAATQL
VQKKLADMET EIALGLQASL RVGRLMDEGK MAPEMISIVK RNNCGKALDI ARVARDMHGG
NGIQIEYQVM RHAANLETVN TYEGTHDVHA LILGRAITGI QAFF
|
|---|
| |