| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2353 |
|---|
| Symbol | |
|---|
| ID | 5149538 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2440230 |
|---|
| End bp | 2441081 |
|---|
| Gene Length | 852 bp |
|---|
| Protein Length | 283 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640557274 |
|---|
| Product | putative serine protease SohB |
|---|
| Protein accession | YP_001238430 |
|---|
| Protein GI | 148253845 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0616] Periplasmic serine proteases (ClpP class) |
|---|
| TIGRFAM ID | [TIGR00706] signal peptide peptidase SppA, 36K type |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 26 |
|---|
| Fosmid unclonability p-value | 0.169927 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGAAGGCGC TGCTTCCGGC GCGGCTGCGC GGCGCACCGG TCGTGCCCGT TGTCCGCCTC
TCCGGCGTGA TCGGCGCGGT GACTCCGCTG CGTCCCGGGC TGACGCTGGC GGGGGTCGCC
AAGATGCTGG AGCGCGCGTT CGCGATGCGC AACGCCAAGG CGGTGGCGCT GGTGATCAAT
TCGCCCGGCG GCTCGCCGGT GCAGTCGCGC CAGATCTATC TGCGGATCCG GCAGCTCGCG
GCCGAGAAGA AGCTGCCGGT GCTCGTCTTC GTCGAGGATG TCGCCGCGTC CGGCGGCTAT
ATGATCGCTT GCGCGGGCGA CGAGATCTTC TGCGATCCCT CGTCGATCCT CGGCTCGATC
GGCGTGGTCA GCGGCTCGTT CGGATTGCAG GACCTGATCA ACAAGATCGG CATCGAACGT
CGGCTGTATA CGGCCGGCGA GCACAAGGCG ATGCTCGATC CGTTCCTGCC CGAAAATCCC
GACGCCGTGG CGCGGCTGAA GAAGATCCAG CGTGAGATCC ACGCGCTGTT CATTTCGCTG
GTGAAGGAGA GCCGCAACGG CCGGCTGAAA AGCGCCGACG ACGTGCTATT CACCGGCGAG
TACTGGGCCG GCGATACGGC GGTGACGCTC GGTCTTGCCG ACGGCATCGG CGATCTCCGC
GCCGTGTTGC GTGCCCGGTT CGGCGACAAG GTGGCGATGC CCGTGGTGGC GCCGGCCGCC
GGATTGTTGT CCGGGCTGCT CGGACGCCGG TCGCCGGGGG CCGGCAGCCT GGCCTTCGGC
TGGGCCGGAT TCGCCGAGGA ACTGATCTCG GCCGCCGAAA CCAGGGCGAT CTGGGCCAGA
TTCGGGTTCT AG
|
|---|
| Protein sequence | MKALLPARLR GAPVVPVVRL SGVIGAVTPL RPGLTLAGVA KMLERAFAMR NAKAVALVIN
SPGGSPVQSR QIYLRIRQLA AEKKLPVLVF VEDVAASGGY MIACAGDEIF CDPSSILGSI
GVVSGSFGLQ DLINKIGIER RLYTAGEHKA MLDPFLPENP DAVARLKKIQ REIHALFISL
VKESRNGRLK SADDVLFTGE YWAGDTAVTL GLADGIGDLR AVLRARFGDK VAMPVVAPAA
GLLSGLLGRR SPGAGSLAFG WAGFAEELIS AAETRAIWAR FGF
|
|---|
| |