| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_2025 |
|---|
| Symbol | |
|---|
| ID | 5152882 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | + |
|---|
| Start bp | 2090007 |
|---|
| End bp | 2091890 |
|---|
| Gene Length | 1884 bp |
|---|
| Protein Length | 627 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 640556965 |
|---|
| Product | TRAP-type C4-dicarboxylate transporter small and large permease |
|---|
| Protein accession | YP_001238121 |
|---|
| Protein GI | 148253536 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG1593] TRAP-type C4-dicarboxylate transport system, large permease component
[COG3090] TRAP-type C4-dicarboxylate transport system, small permease component |
|---|
| TIGRFAM ID | [TIGR00786] TRAP transporter, DctM subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 6 |
|---|
| Plasmid unclonability p-value | 0.19419 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 36 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCATGC AGCTCGCCGA ACAATCCAGT GCGTCCCTCC TGCCGGCAAC CGGATTGGTC
TCCATCACGC GCGCGCTCGA GCGGGGGCTC GGCGCCATCG TTTCGGCTGC GGCGGCGCTG
CTCGTCGTCG CCGAGATCGG CGTGCTGTTC GCGGGCGTGT GCACCCGCTA CGTCTTCCAC
AGGCCGCTGA TCTGGTCGGA CGAGCTGGCC GGCATTCTCT TCCTGTGGCT TGCCATGCTC
GGCGCCGCCG TCGCCTTCCA GCGCGGCGAG CACATGCGCA TGACCGCCGC GGTGGGGCGC
TTGTCGAAGC GGATGCAATC GTTCCTCGAC GTGCTCGCCA TCGCCGCGCC GCTCGCCTTC
CTGATCCTCG TCATCGATCC CGCCTATGAG TTCGCTGCCG ACGAGGCGAT CATCACCACG
CCGGCGCTGG AGCTGTCCAA TCTGTGGCGC GCCGCCGCGC TGCCGACCGG CCTCGGCGTC
ATGCTGGTCA TGGCCGTGCT GCGGCTGTGC ACGCTCGGCG AATGGAAGCT GGTCGGTGCC
GCCGCTGTGC TGATCGGCGC GACCGGCATG GGGCTTCATC TGATCGGCCC GGCGCTGATC
CCGCTCGGCA ACCTCAATCT GCTGATCTTC TTCGTCGGCC TCGTTGCGAT CCTGGTGTTC
GCCGCGGTGC CGATCGCCTT CGCCTTCGGC CTCGCCACCT TCGCCTACAT CACCTTGACG
ACGACCACGC CGTCCACCGT CGTGATCGGT CGCATGGACG AGGGCATGAG CCATCTGATC
CTGCTGTCGG TGCCGCTGTT CGTGTTCCTC GGCCTGCTGA TCGAGATGAC CGGGATGGCG
CGGGCGATGG TCGGCTTTCT TGCCAGCCTG CTGGGGCACG TCCGTGGCGG CCTGCAATAT
GTGCTGGTCG CGGCGATGTA TCTCGTCTCC GGCATCTCCG GCTCCAAGGC CGCCGACATG
GCGGCGGTCG CGCCGGTGCT GTTTCCCGAA ATGGTGAAGC GCGGCGCCAG GCCCGGCGAT
CTCGTGGCCC TCTTGTCCGC CACTGGCGCG CAGACCGAGA CGATCCCGCC GAGTCTCGTG
CTGATCACCA TCGGCTCGGT CACCGGCGTA TCGATCGCGG CGCTGTTCAC CGGCGGCCTG
CTGCCCGGCC TGGTACTGGC CGTCATGCTG TGCATCGTGG TCTGGCAGCG CTATCGCGGC
GAGGATCTGT CGCATGTCAG CAAGGCGAGT CTCGGCATGA TCGCCAAGAG CTTTGTCATC
GCTCTGCCGG CGGTGGCGCT GCCTTTCATC ATCCGCGCCG CCGTGGTCGG CGGCGTCGCG
ACCGCGACCG AAGTCTCCAC CATCGGCATC GTCTATTCGG CACTGTGCGG TCTGCTGCTC
TACCGCCGCT TCGACTGGCG GCGGCTGTCG CCGATGCTGA TCGAGACCGC GGCGCTGTCC
GGCGCCATCC TGCTGATCAT CGGCGCCGCC ACCGGCATGG CCTGGGCGCT GACCCAGTCC
GGCTTCTCCA CCGCGCTGGC GCGCTTCATG ACCAATCTGC CCGGCGGCGC CCCGATGTTC
CTGGCGGTCA CCATCGTGGC CTTCATCGTG CTCGGCAGCG TGCTCGAAGG CATTCCCGCG
ATCGTGCTGT TCGGCCCGCT GCTGTTTCCG ATCGCCAAGC AGATCGGCAT CCACGAGGTG
CACTATGCGA TGGTGGTGAT CCTGGCGATG GGGATCGGCC TGTTCGCGCC GCCATTCGGC
GTCGGCTACT ACGCCGCCTG CGCTATCAGC CGGATTCATC CGGACCTCGG GATCAGGCCG
ATGCTGGGCT ACACGCTGGC GCTCCTGATC GGCACGATCG TGATCGCGGC CGTGCCGTGG
TTCTCGATCG GGCTGCTGCG ATGA
|
|---|
| Protein sequence | MAMQLAEQSS ASLLPATGLV SITRALERGL GAIVSAAAAL LVVAEIGVLF AGVCTRYVFH
RPLIWSDELA GILFLWLAML GAAVAFQRGE HMRMTAAVGR LSKRMQSFLD VLAIAAPLAF
LILVIDPAYE FAADEAIITT PALELSNLWR AAALPTGLGV MLVMAVLRLC TLGEWKLVGA
AAVLIGATGM GLHLIGPALI PLGNLNLLIF FVGLVAILVF AAVPIAFAFG LATFAYITLT
TTTPSTVVIG RMDEGMSHLI LLSVPLFVFL GLLIEMTGMA RAMVGFLASL LGHVRGGLQY
VLVAAMYLVS GISGSKAADM AAVAPVLFPE MVKRGARPGD LVALLSATGA QTETIPPSLV
LITIGSVTGV SIAALFTGGL LPGLVLAVML CIVVWQRYRG EDLSHVSKAS LGMIAKSFVI
ALPAVALPFI IRAAVVGGVA TATEVSTIGI VYSALCGLLL YRRFDWRRLS PMLIETAALS
GAILLIIGAA TGMAWALTQS GFSTALARFM TNLPGGAPMF LAVTIVAFIV LGSVLEGIPA
IVLFGPLLFP IAKQIGIHEV HYAMVVILAM GIGLFAPPFG VGYYAACAIS RIHPDLGIRP
MLGYTLALLI GTIVIAAVPW FSIGLLR
|
|---|
| |