Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_2024 |
Symbol | |
ID | 5152748 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 2088960 |
End bp | 2089979 |
Gene Length | 1020 bp |
Protein Length | 339 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 640556964 |
Product | putative TRAP-type C4-dicarboxylate transport system, periplasmic component |
Protein accession | YP_001238120 |
Protein GI | 148253535 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1638] TRAP-type C4-dicarboxylate transport system, periplasmic component |
TIGRFAM ID | [TIGR00787] tripartite ATP-independent periplasmic transporter solute receptor, DctP family |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.140424 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 38 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCTCAAGG TGAGCCGTCG TGCGTTGTTG ACCACTGCAG CCGGCGCCGC CGCTGGCTGT CTCGTGCAGA GCCCGGCCGT GCTGGCCCAG GCTGCGCCGC TCAAGCTGAA ATTTGGCAAC GATCTGCCGG CCACGCACGC GGTCAACGTG CGGCTGCGCG AGGCCGTCGA GGCGATCACC GCGGAGACCA AGGGGCAGGT CGAGATCAGC CTGTTTCCGA ACAACCAGCT CGGCAGCGAC AGCGACATGA TCACCCAGCT GCGTTCCGGC GCGCTCGAGC TCGCGACCAT GCCGGGCACC GTGCTGTCGA CGTTGATCCC GACGGCGTCG CTGACCGGCG TCGGCTTCGC CTTCACCAGC TACGATAAGG TGTGGGCCGC GATGGACGGC GAGGTCGGTG GCTTCATCCG CCGCAACATC GAGAAGGTGG GGCTGTTTCC GTTCGAGAGC GTCTGGGACA ATGGCTTCCG CCAGATCACG ACCAGCACCA AGCCGATCAC CGCGCCGGCC GATCTCGCCA ACTTCAAGAT CCGTGTGCCC GTCGTGCCGC TGTGGGTCGC GATGTTCTCG GCGTTCGGCG CCTCGCCGAT CAGCGTGCCC TTGAGCGAGG CCTATTCGGC GCTGCAGACC AGGATCGCCG ACGGCCAGGA GAACCCGCTG GCGCTGATCG ATTCCGCCAA GTTCTACGAG GTGCAGAAAT TCTGCTCGCT GACCAATCAC AGCTGGGACG GCTTCTGGCT GCTGTCCAGC GGCAAGATCT GGAAGACGAT CCCGCAGGAC GTCCAGAAGC TGCTGCAGAC GACGTTCAAC GCGGCCGCCA GGAAGCAGCG CAACGATATC GTCCAGGCCA ACGCCGATCT GCAGAAGAGC TTGGAAGGCA AGGGCCTGAC CTTCAACAAG ACCGATGCCG AGCTGTTCCA GGCGACCCTG GCCAAAACCA GTTTCTACAA GGACGCCAAG ACGAAGTTCG GCGACGAGGC CTGGGCGCTG CTGCAGCGCT ACGCCGGAAA TATCAGCTGA
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Protein sequence | MLKVSRRALL TTAAGAAAGC LVQSPAVLAQ AAPLKLKFGN DLPATHAVNV RLREAVEAIT AETKGQVEIS LFPNNQLGSD SDMITQLRSG ALELATMPGT VLSTLIPTAS LTGVGFAFTS YDKVWAAMDG EVGGFIRRNI EKVGLFPFES VWDNGFRQIT TSTKPITAPA DLANFKIRVP VVPLWVAMFS AFGASPISVP LSEAYSALQT RIADGQENPL ALIDSAKFYE VQKFCSLTNH SWDGFWLLSS GKIWKTIPQD VQKLLQTTFN AAARKQRNDI VQANADLQKS LEGKGLTFNK TDAELFQATL AKTSFYKDAK TKFGDEAWAL LQRYAGNIS
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