Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_1999 |
Symbol | hupD |
ID | 5152110 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 2066944 |
End bp | 2067531 |
Gene Length | 588 bp |
Protein Length | 195 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 640556940 |
Product | hydrogenase maturation |
Protein accession | YP_001238096 |
Protein GI | 148253511 |
COG category | [C] Energy production and conversion |
COG ID | [COG0680] Ni,Fe-hydrogenase maturation factor |
TIGRFAM ID | [TIGR00072] hydrogenase maturation protease [TIGR00140] hydrogenase expression/formation protein |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.116789 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACGGACC ACGCGAAGCT CGATCGCATC CTGGTGCTCG GCATCGGCAA TATCCTGTGG GCGGATGAAG GCTTCGGCGT GCGGGTGGTG GAGGAATTCC ACCGCCGCTA CGCCGTGCCC GACAACGTCA CGATCCTCGA TGGCGGCACC CAGGGACTCT ATCTGGTCAA CTATGTCGAG GAGGCGGACG GCCTGATCGT GTTCGACGCG ATCGACTATG GACTTGCGCC GGGCGAGCTC AAGCTCGTCC GCGACGACGA GGTGCCGCGC TTCACCGGTG CCAAGAAGAT GAGCCTGCAC CAGACCGGGT TCCAGGAGGT CCTGAGCGCA GCCGATCTGC TCGGCCGCTA TCCGCGCCGG CTCGCCTTGA TCGGCTGCCA GCCGCTCGAT CTCGAGGATT GGGGCGGCCC ATTGACGGCG CCGGTGCGCG CGCAGATCGG GCCGGCGATC GAACTGGCCT GCGCGCTCCT GGCAGAATGG GGCGCGCCAG CCGCGCTGCG AAGCGAGCCG GTCGCGGCCG ATGCGCGGCT GCTCGCCAAT GACATCGATC ACCAGAGCTA CGAGATGCGC GCCCGTCCGG CAGAGTGA
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Protein sequence | MTDHAKLDRI LVLGIGNILW ADEGFGVRVV EEFHRRYAVP DNVTILDGGT QGLYLVNYVE EADGLIVFDA IDYGLAPGEL KLVRDDEVPR FTGAKKMSLH QTGFQEVLSA ADLLGRYPRR LALIGCQPLD LEDWGGPLTA PVRAQIGPAI ELACALLAEW GAPAALRSEP VAADARLLAN DIDHQSYEMR ARPAE
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