Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | BBta_1998 |
Symbol | hupC |
ID | 5152109 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Bradyrhizobium sp. BTAi1 |
Kingdom | Bacteria |
Replicon accession | NC_009485 |
Strand | + |
Start bp | 2066187 |
End bp | 2066930 |
Gene Length | 744 bp |
Protein Length | 247 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 640556939 |
Product | Ni/Fe-hydrogenase, 1 b-type cytochrome subunit |
Protein accession | YP_001238095 |
Protein GI | 148253510 |
COG category | [C] Energy production and conversion |
COG ID | [COG1969] Ni,Fe-hydrogenase I cytochrome b subunit |
TIGRFAM ID | [TIGR02125] Ni/Fe-hydrogenase, b-type cytochrome subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.130131 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 34 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGATGGATG CAGTTGCTCG TCCCGCCGAG GCCGAGCCCA ACCTTGCCGC GATCGCGGCC GACGCAGCCG GCGAGCATGC GGTCGGCCGG CCTACGGTCT ATGTCTACGA AGCGCCCGTG CGCATCTGCC ATTGGGTGAA CGCGTTTGCG ATCATCGTGC TGATGGTCAC CGGCTATCTG ATCGGGACGC CGCTGCCGAG TGTCGAGGGC GAGGCGTCGG CAAGCTTCGT GATGGGCTAT ATCCGGTTTG CGCATTTCGC GGCCGGGCAG GTGCTGGCGG TGTTCTTCCT CGCCCGCATC CTCTGGGCCT TTGTCGGCAA CCACCATTCC CGGCAGATCT TCTACATTCC GGTGCATCGC AAGCAGTTCT GGAAGGAGGT GCTGCACGAG ATCCGCTGGT ATGCGTTCCT GGAGCGCGAG CCGAAGATGT ATGTCGGTCA CAATCCGCTG GCGCAGACGG CGATGTTCAC CGGCTTCACG CTGTTCGTCG CCTTCATGAT CGTCACCGGC TTTGCGCTTT ATTCGGAGGG CACCGGCATC GACAGCTGGC AGCACAAACT GTTCGGATGG GTGTTTGCGA TCTGGCCGAA CAGCCAGGAC GTGCACACCT ATCATCACCT CGGCATGTGG GCGCTGGTGA TGTTCGTGAC CGTGCATGTC TACGCCGCGA TCCGCGAGGA CATCATGTCC CGTCAGAGCA TCATCTCGTC GATGATCTCG GGCGAGCGGC AGTTCCGCGA GTGA
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Protein sequence | MMDAVARPAE AEPNLAAIAA DAAGEHAVGR PTVYVYEAPV RICHWVNAFA IIVLMVTGYL IGTPLPSVEG EASASFVMGY IRFAHFAAGQ VLAVFFLARI LWAFVGNHHS RQIFYIPVHR KQFWKEVLHE IRWYAFLERE PKMYVGHNPL AQTAMFTGFT LFVAFMIVTG FALYSEGTGI DSWQHKLFGW VFAIWPNSQD VHTYHHLGMW ALVMFVTVHV YAAIREDIMS RQSIISSMIS GERQFRE
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