Gene BBta_1960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagBBta_1960 
Symbol 
ID5151682 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameBradyrhizobium sp. BTAi1 
KingdomBacteria 
Replicon accessionNC_009485 
Strand
Start bp2024858 
End bp2025529 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content68% 
IMG OID640556903 
Productputative urease accessory protein UreF 
Protein accessionYP_001238059 
Protein GI148253474 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0830] Urease accessory protein UreF 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones13 
Plasmid unclonability p-value0.702591 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones33 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCTCCCGT TGTTGCGCGC GATCTGGCAG GCCGATGCGG CGTTTCCAAG CGGTGCCTTT 
GCCTTCTCCT ACGGCATCGA AGGAGCGCTG GCGTTGCGCC CCGACATGAG CCTGGGCGAG
TTCGAACGTC TCTGCGCCGC GGTGCTGCAG CAGCGCTGGG CAAGCTATGA TCGGATCGCG
CTGCAACGGG CGTTTCGCGC CGGCAGGGAT CTCGATGCGT TGGCCGCGGT GGATCGGGAG
ATCGAGGCCT CCACCATGAT CGAGGCGCTG CGCGCCGGTT CGCGCCGCAA TGGCGCGTCA
TTTCTGGCGG CGCATGCGCG GCTCGGACAG CCGCTTGCGC TCAAGCTGCG CGCGCAGGTG
AAGGCCGGTG ACTGCCTGGG GCATATCGCC GTGATGCAGG GCGCCATATG GGCGGCGCTG
CAGCTCGATG AGCAGCACGC CGCCTTGTGC TCGGCCTACA CGGTGGCGTC CGGCCTCATC
ACCGCGGCGG TGCGGCTCGG CGCCGTCGGC GCCCTGCAGG GGCAAAGCGT GCTGCAGGCG
CTGCTGCCGC TGATCGATGC CCTGGTCGCA ACTCCGCTCG ACGACGACGC CGAGCTCGAA
AGCTTCATCC CCATCCTCGA CATTGCGGCC GCGCGCCATG TCCACGCCGA ATTGCGGCTG
TTCGCCAATT GA
 
Protein sequence
MLPLLRAIWQ ADAAFPSGAF AFSYGIEGAL ALRPDMSLGE FERLCAAVLQ QRWASYDRIA 
LQRAFRAGRD LDALAAVDRE IEASTMIEAL RAGSRRNGAS FLAAHARLGQ PLALKLRAQV
KAGDCLGHIA VMQGAIWAAL QLDEQHAALC SAYTVASGLI TAAVRLGAVG ALQGQSVLQA
LLPLIDALVA TPLDDDAELE SFIPILDIAA ARHVHAELRL FAN