| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | BBta_1705 |
|---|
| Symbol | |
|---|
| ID | 5154869 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Bradyrhizobium sp. BTAi1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_009485 |
|---|
| Strand | - |
|---|
| Start bp | 1778059 |
|---|
| End bp | 1779627 |
|---|
| Gene Length | 1569 bp |
|---|
| Protein Length | 522 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 640556662 |
|---|
| Product | oxidoreductase |
|---|
| Protein accession | YP_001237820 |
|---|
| Protein GI | 148253235 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2303] Choline dehydrogenase and related flavoproteins |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 27 |
|---|
| Fosmid unclonability p-value | 0.318945 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAAAAT TCGATCAGAA CGATTCGAGC GTCGTCGTCA TCATCGGCTC GGGTGCCGGC
GGCGGCACGC TCGGCAACGA GCTTGCGCAG AAGGGCATCA AGGTCGTTAT TCTCGAAGCC
GGCAATCGCT ACGAGATTCC GGACTTCATC AACGATGAAT GGGAGAGCTT CACCCAGCTC
GCCTGGACCG ACATGCGCAC GACGTCCGGC ACCTGGCGGG TGGCGAAGGA CTTCGCCAAT
CTGCCGGCCT GGATCGTGAA GGCGGTCGGC GGCTCCACCG TGCACTGGGC CGGCGCCTCG
CTGCGCTTCG AGGAGCACGA GTTCAAGGCC CGCACCACCT ATGGCGGCGT GCCCGGCGCG
AGCCTGATGG ACTGGCCGGT GACGCTCGCC GAGATGGAGC CGTGGTACGC CAAGGCCGAG
TTCAAGATGG GCGTGACCCG CACCAACGAC ATTCCCGGCC TGCCCGGCAA CAACAACTTC
AAGGTGCTCG AGGCCGGCGC CCGCAAACTC GGCTACAAGA CCGTGCACAC CGGCAACATG
GCGATCAACT CGCAGCCGCG CGACGGCCGC GGCGCCTGCC AGCAGATCGG CTTCTGCTTC
CAGGGCTGCA AATCCGGAGC GAAATGGTCG ACCCTGTACA CCGAGATCCC GAAGGGCGAG
GCCACCGGCA ATCTCGAAGT GCGTTCCGGC AGCATGGCGA TCAAGATCGA GCATGATGCC
TCCGGCAAGG TCACCGGCGT GGTCTATGCC GACAGCCAGG GCAAGATGCA GTTGCAGAAG
GCCCGCATCG TCGCCGTCGC CGGCAACTCG ATCGAGAGCC CGCGGCTCCT GCTCAACAGC
GCCTCGAACC TGTTCCCGGA CGGCCTCGCC AACTCCTCCG GCCAGGTCGG CCGCAACTAC
ATGCGGCACA TGACCGGCAG CGTCTATGCG ACGTTCGAGA ACCCGGTGCA CATGTATCGC
GGCACCACGA TGGCCGGCAT CGTCCGCGAC GAGGCAGCGT TCAATCCGAA GCGCGGCTTC
GTCGGCGGCT ATGAGATGGA AACGCTGTCG CTCGGCCTGC CGTTCATGGC GGCGTTCCTC
AATCCCGGCG CCTGGGGCCG CAGCTTCACC GCGGCCATGG AGACCTATCC GCGCATGGCC
GGCATGTGGC TGGTCGGCGA GGACATGCCG CAGGAGACCA ACCGCATCAC GCTCGACCCG
GTCGCCAAGG ACAAGTTCGG CATGCCGGTG GCGTCAGTGC ATTTCGACGA TCATCCGAAT
GACGTCGCGA TGCGCGCCCA CGCCTACAAG CAGGGCTCGG CGATCTACGA GGCGGTCGGC
GCCACCGTGA CCTATCCGAC CACGCCCTAT CCCTCGACGC ATAATCTCGG CACCAACCGG
ATGAGCGAGA AAGCCAAGGA CGGCGTCGTC AACAAGTTCG GCCAGACCCA CGACATCAAG
AACCTGTTCG TCTCCGACGG CAGCCAGTTC ACCACGGGCG CGGCGTGCAA CCCCACGCTG
ACCATCGTGG CGCTGGCGAT CCGCCAGGCC GACTACATCG CGGGCGCGAT GCAGAAGAAG
GAGATCTGA
|
|---|
| Protein sequence | MAKFDQNDSS VVVIIGSGAG GGTLGNELAQ KGIKVVILEA GNRYEIPDFI NDEWESFTQL
AWTDMRTTSG TWRVAKDFAN LPAWIVKAVG GSTVHWAGAS LRFEEHEFKA RTTYGGVPGA
SLMDWPVTLA EMEPWYAKAE FKMGVTRTND IPGLPGNNNF KVLEAGARKL GYKTVHTGNM
AINSQPRDGR GACQQIGFCF QGCKSGAKWS TLYTEIPKGE ATGNLEVRSG SMAIKIEHDA
SGKVTGVVYA DSQGKMQLQK ARIVAVAGNS IESPRLLLNS ASNLFPDGLA NSSGQVGRNY
MRHMTGSVYA TFENPVHMYR GTTMAGIVRD EAAFNPKRGF VGGYEMETLS LGLPFMAAFL
NPGAWGRSFT AAMETYPRMA GMWLVGEDMP QETNRITLDP VAKDKFGMPV ASVHFDDHPN
DVAMRAHAYK QGSAIYEAVG ATVTYPTTPY PSTHNLGTNR MSEKAKDGVV NKFGQTHDIK
NLFVSDGSQF TTGAACNPTL TIVALAIRQA DYIAGAMQKK EI
|
|---|
| |